Click here to switch to the map view.

The map label for this gene is ygbI [H]

Identifier: 29143175

GI number: 29143175

Start: 2897265

End: 2898029

Strand: Direct

Name: ygbI [H]

Synonym: t2820

Alternate gene names: 29143175

Gene position: 2897265-2898029 (Clockwise)

Preceding gene: 29143170

Following gene: 29143177

Centisome position: 60.46

GC content: 55.95

Gene sequence:

>765_bases
TTGATACCTACTGAGCGTCGACAAATCATTCTTGATATGGTGGCGGAGAAAGGCATCGTCAGTATCGCTGAACTGACCGA
GCGCATGCATGTATCCCACATGACTATCCGCCGTGATTTACAAAAACTGGAGCAGCAAGGCGCGGTAATCCAGGTCTCTG
GCGGCGTGCAATCATCGACTCGCGTGGCGCACGAACCCTCGCATCAGATCAAAACCGAACTGGCGACGCCGCAGAAAGCG
GCGATTGGCAAACTGGCCGCCAGCCTGGTACAGCCAGAAAGCTGTATCTACCTTGATGCAGGTACGACCACGCTGGCGAT
CGCCAGGCAGCTGGTTACGATGAATAAACTTACGGTGGTGACCAATGATTTCGTTATCGCCGATTACCTGATGGACAATA
GCGGTTGCACAATTATTCACACTGGCGGGGCGGTATGCCGGGAAAACCGGTCGTGCGTCGGTGAAGCCGCGGCGACGCTT
TTGCGCGGGCTGATGATTGACCAGGCCTTTATTTCCGCCTCTTCCTGGAGCGTGCGCGGTATTTCAACGCCGGCAGAAGA
TAAAGTCACGGTGAAACGGGCCGTCGCCAGCGCCAGCCGCCAAAAAATTCTGGTGTGCGACGCGACCAAATACGGCCAGG
TCGCGACGTGGCTGGCGTTATCGCTGGCGGAATTCAACCAAATCGTCACCGATGACGGCCTGCCGGAAAGCGCAATTCGG
GCGCTGGCTAAAGTGGATATCTCACTGCTGATGGCCAAACAATAG

Upstream 100 bases:

>100_bases
AAAATATGTTATTTTTTGTGAAGGCAATCCTCATAGAACTTCACACGCTGTGACGAGAAATCGCGTAAAATCGCGACAGG
ACTAAAGAAAGGAGCAGACG

Downstream 100 bases:

>100_bases
CGAAGCGGCGCAAGCCGCTTACGTCATCATCTTGCGAACCAGTTGCGTAAACTGTTCGCGTTCTTCAGCGCTCAGTCGCC
CCAAAAACTCATCGTCAACG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA
AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATL
LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALSLAEFNQIVTDDGLPESAIR
ALAKVDISLLMAKQ

Sequences:

>Translated_254_residues
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA
AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATL
LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALSLAEFNQIVTDDGLPESAIR
ALAKVDISLLMAKQ
>Mature_254_residues
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA
AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATL
LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALSLAEFNQIVTDDGLPESAIR
ALAKVDISLLMAKQ

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=254, Percent_Identity=85.8267716535433, Blast_Score=450, Evalue=1e-128,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=29.8804780876494, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789059, Length=256, Percent_Identity=29.296875, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=30, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082344, Length=237, Percent_Identity=27.8481012658228, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787540, Length=244, Percent_Identity=29.9180327868852, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1790635, Length=256, Percent_Identity=23.4375, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790753, Length=255, Percent_Identity=26.2745098039216, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=27.3109243697479, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=24.4635193133047, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27358; Mature: 27358

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSST
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
RVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVV
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHEEEE
TNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATLLRGLMIDQAFISASSWSVRG
ECCEEEEEEEECCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
ISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALSLAEFNQIVTDDGLPESAIR
CCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ALAKVDISLLMAKQ
HHHHHHHHHEEECC
>Mature Secondary Structure
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSST
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
RVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVV
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHEEEE
TNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATLLRGLMIDQAFISASSWSVRG
ECCEEEEEEEECCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
ISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALSLAEFNQIVTDDGLPESAIR
CCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ALAKVDISLLMAKQ
HHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]