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The map label for this gene is ybgF [H]

Identifier: 29142538

GI number: 29142538

Start: 2187782

End: 2188570

Strand: Reverse

Name: ybgF [H]

Synonym: t2126

Alternate gene names: 29142538

Gene position: 2188570-2187782 (Counterclockwise)

Preceding gene: 29142539

Following gene: 29142537

Centisome position: 45.67

GC content: 52.34

Gene sequence:

>789_bases
ATGAGCAGTAACTTCAGACATCACCTGTTGAGTCTGTCGTTACTGGTTGGCATAGCGGCCCCCTGGGCCGCTTTTGCTCA
GGCGCCAATCAGTAGTGTCGGCTCAGGCTCGGTCGAAGACCGCGTCACTCAACTTGAGCGTATCTCTAACGCTCACAGCC
AGCTTTTAACCCAACTTCAGCAGCAGCTCTCCGATAATCAGTCTGATATCGATTCTTTGCGCGGCCAAATCCAGGAAAAT
CAGTATCAACTGAATCAGGTGATGGAGCGCCAGAAGCAAATTATGCTGCAGCTGGGGAGTTTAAATAATGGCGGCGCAGC
GCAGCCAGCAGCTGGCGACCAGAGCGGGGCGGCAACCGCTGCGACCCCCGCTCCGGATGCCGGTACGGCAACCTCAGGGG
CGCCGGTACAAAGTGGCGATGCGAATACCGATTACAATGCGGCAATTGCGCTGGTGCAGGATAAGTCTCGCCAGGATGAT
GCGATTGTGGCGTTTCAGAACTTCATCAAGAAATACCCTGATTCTACTTATCAGCCGAACGCCAATTATTGGCTGGGCCA
GTTGAATTACAACAAGGGTAAAAAAGATGACGCCGCCTATTATTTCGCCTCGGTAGTAAAAAACTATCCTAAGTCGCCGA
AGGCTGCGGACGCGATGTACAAAGTTGGCGTTATCATGCAGGACAAAGGTGATACGGCAAAAGCGAAAGCGGTTTATCAG
CAGGTGATTAACAAATATCCTGGCACTGATGGCGCGAAACAGGCGCAGAAGCGTCTTAACGCGATGTAA

Upstream 100 bases:

>100_bases
CATCGTTTCTTACGGTAAAGAAAAACCTGCCGTACTGGGCCACGACGAAGCGGCTTACGCTAAGAACCGTCGCGCTGTAC
TGGTTTACTAAGAGAATTGC

Downstream 100 bases:

>100_bases
TGCGTACCATGCGACCAGAAAACGCCTTTTTTCTGGTCGCGTCGTGCGATTCCTAAGCAGTTGAGCCCTCTGCGTCGAAA
TTTTTGTTGCGCTCAAATCT

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN
QYQLNQVMERQKQIMLQLGSLNNGGAAQPAAGDQSGAATAATPAPDAGTATSGAPVQSGDANTDYNAAIALVQDKSRQDD
AIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMYKVGVIMQDKGDTAKAKAVYQ
QVINKYPGTDGAKQAQKRLNAM

Sequences:

>Translated_262_residues
MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN
QYQLNQVMERQKQIMLQLGSLNNGGAAQPAAGDQSGAATAATPAPDAGTATSGAPVQSGDANTDYNAAIALVQDKSRQDD
AIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMYKVGVIMQDKGDTAKAKAVYQ
QVINKYPGTDGAKQAQKRLNAM
>Mature_261_residues
SSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ
YQLNQVMERQKQIMLQLGSLNNGGAAQPAAGDQSGAATAATPAPDAGTATSGAPVQSGDANTDYNAAIALVQDKSRQDDA
IVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMYKVGVIMQDKGDTAKAKAVYQQ
VINKYPGTDGAKQAQKRLNAM

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=263, Percent_Identity=90.4942965779468, Blast_Score=435, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28218; Mature: 28086

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QQLSDNQSDIDSLRGQIQENQYQLNQVMERQKQIMLQLGSLNNGGAAQPAAGDQSGAATA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
ATPAPDAGTATSGAPVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFIKKYPDSTYQPN
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMYKVGVIMQDKGDTAKAKAVYQ
CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCEEEECCCCHHHHHHHHH
QVINKYPGTDGAKQAQKRLNAM
HHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QQLSDNQSDIDSLRGQIQENQYQLNQVMERQKQIMLQLGSLNNGGAAQPAAGDQSGAATA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
ATPAPDAGTATSGAPVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFIKKYPDSTYQPN
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMYKVGVIMQDKGDTAKAKAVYQ
CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCEEEECCCCHHHHHHHHH
QVINKYPGTDGAKQAQKRLNAM
HHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]