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The map label for this gene is pal [H]

Identifier: 29142539

GI number: 29142539

Start: 2188580

End: 2189104

Strand: Reverse

Name: pal [H]

Synonym: t2127

Alternate gene names: 29142539

Gene position: 2189104-2188580 (Counterclockwise)

Preceding gene: 29142540

Following gene: 29142538

Centisome position: 45.68

GC content: 53.9

Gene sequence:

>525_bases
ATGCAACTGAACAAAGTGCTGAAGGGCCTGATGATTGCCCTGCCTGTTATGGCAATCGCGGCATGTTCTTCCAACAAGAA
CGCCAGCAATGACGGTAGCGAAGGCGGCATGCTGAACGGCGCCGGCACTGGTATGGACGCTAACGGCAACGGCAACATGT
CATCTGAAGAGCAAGCGCGTCTGCAGATGCAGCAGCTGCAGCAGAACAACATCGTTTACTTCGATCTCGACAAGTACGAT
ATCCGTTCTGACTTCGCGGCAATGCTGGATGCGCACGCTAACTTCCTGCGTAGCAACCCGTCTTACAAAGTCACCGTAGA
AGGTCACGCGGACGAACGCGGTACTCCGGAGTACAACATCTCCCTGGGCGAACGTCGTGCTAACGCCGTTAAAATGTACC
TGCAGGGTAAAGGCGTTTCCGCTGACCAGATCTCCATCGTTTCTTACGGTAAAGAAAAACCTGCCGTACTGGGCCACGAC
GAAGCGGCTTACGCTAAGAACCGTCGCGCTGTACTGGTTTACTAA

Upstream 100 bases:

>100_bases
TTCAAAGCGCGTCTTCCGGCAACTGATGGTCAGGTGAAATCGCCTGCCTGGTCGCCGTATCTGTGATAATAATTAATTGA
TTACTAAAGGAATTAAAGAA

Downstream 100 bases:

>100_bases
GAGAATTGCATGAGCAGTAACTTCAGACATCACCTGTTGAGTCTGTCGTTACTGGTTGGCATAGCGGCCCCCTGGGCCGC
TTTTGCTCAGGCGCCAATCA

Product: peptidoglycan-associated outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTGMDANGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYD
IRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD
EAAYAKNRRAVLVY

Sequences:

>Translated_174_residues
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTGMDANGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYD
IRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD
EAAYAKNRRAVLVY
>Mature_174_residues
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTGMDANGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYD
IRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD
EAAYAKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=175, Percent_Identity=97.1428571428571, Blast_Score=310, Evalue=4e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18865; Mature: 18865

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTGMDANGNGNMSSEEQAR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHH
LQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNI
HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEE
SLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVLVY
EECCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCHHHHHCCCEEEEEC
>Mature Secondary Structure
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTGMDANGNGNMSSEEQAR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHH
LQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNI
HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEE
SLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVLVY
EECCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]