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The map label for this gene is ybiR [H]

Identifier: 29142472

GI number: 29142472

Start: 2112712

End: 2113824

Strand: Reverse

Name: ybiR [H]

Synonym: t2051

Alternate gene names: 29142472

Gene position: 2113824-2112712 (Counterclockwise)

Preceding gene: 29142473

Following gene: 29142470

Centisome position: 44.11

GC content: 54.36

Gene sequence:

>1113_bases
ATGAATCTGGCCTTTTTACGGGCGCTGCGGCGTGACCGTTTTTTTCAGTTGTTGATCATTGTGGGGATGGCGTTAAGCCT
GTTTGTTCCTTTTGCGCCCCGCGCCTGGCCTGGCGCGATTGACTGGCACACCATTATTACCCTCAGTGGGTTAATGTTGC
TCACTAAAGGCGTTGAGCTGAGCGGCTATTTTGATGTGCTGGGACGCAAGATGACGCGCCGATTTCATACCGAGCGGCAA
CTGGCGATGTTCCTGGTGCTGGCTGCGGCGGCGCTGTCGACCTTTCTGACAAACGATGTCGCGCTGTTTATCGTTGTGCC
GCTGACGATAACGTTAAAAAAACTGTGCGCGATTCCGGTCAACCGATTGATTATTTTTGAAGCGTTAGCGGTGAACGCCG
GTTCGCTGCTGACGCCTGTCGGTAATCCGCAAAATATTCTGTTGTGGGGACGCTCCGGCTTAAGCTTTGCTGAATTTAGC
GGGCAAATGGCGCCGCTTGCCGTCATGATGATGCTGACGTTACTGCTCCTGTGCTGGTTTTGTTTTCCGGGTAGGGCGTT
ACAGTATCATACCGGTACGCGTTCGCCGCAGTGGCAGCCCCGTCTGGTGTGGAGTTGCCTGGCATTATATGTCGTTTTTC
TTACCGCGCTGGAGCTCAGGCAAGAGTTATGGGGACTGGTGTTGGTGGCGGCTGGGTTTATTGTGCTGGCGCGCAGGGTG
ATAGTCAGCGTGGACTGGACGCTGCTGCTGGTATTTATGGCGATGTTTATTGATGTCCATCTGCTAACGCAATTGCCGGC
GTTGCAGGGCGTTTTCAACCAAGTTGGCGCACTGTCTCACCTGGGACTTTGGCTAACCGCTATCGGCCTGTCGCAGGTTA
TCAGTAATGTGCCCAGTACCATTCTCCTGCTGAACTATGTACCGGCCTCGACGTTGCTGGCGTGGGCGGTGAATATCGGC
GGGTTTGGTCTGCTGCCGGGGTCGCTGGCAAATCTTATTGCTTTACGGATGGCGAACGATCGCCGAATCTGGTGGCGATT
TCATTTCTATTCGCTGCCGATGCTGGCATGGGCGGCGCTGGTGGGATATGGATTATTGCAACTGATGCCGTAA

Upstream 100 bases:

>100_bases
AAATCGCGCGTCGTGATGCGGAAGGGATGGAACACCATGTCAGCCAAGAGACATTAGATGCCTTTTTGGCCTTCACGCAA
CAGCATGGAACATCTGCAGA

Downstream 100 bases:

>100_bases
GAGAAGCCCGATAGTGTCTATCGGGCTTCGCAGGCAGAGTCTGTCAGTTCAGACGAACCGGCATCCCGGAACGATCCTGA
ACTGCCTGTTGTACGACGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MNLAFLRALRRDRFFQLLIIVGMALSLFVPFAPRAWPGAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMTRRFHTERQ
LAMFLVLAAAALSTFLTNDVALFIVVPLTITLKKLCAIPVNRLIIFEALAVNAGSLLTPVGNPQNILLWGRSGLSFAEFS
GQMAPLAVMMMLTLLLLCWFCFPGRALQYHTGTRSPQWQPRLVWSCLALYVVFLTALELRQELWGLVLVAAGFIVLARRV
IVSVDWTLLLVFMAMFIDVHLLTQLPALQGVFNQVGALSHLGLWLTAIGLSQVISNVPSTILLLNYVPASTLLAWAVNIG
GFGLLPGSLANLIALRMANDRRIWWRFHFYSLPMLAWAALVGYGLLQLMP

Sequences:

>Translated_370_residues
MNLAFLRALRRDRFFQLLIIVGMALSLFVPFAPRAWPGAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMTRRFHTERQ
LAMFLVLAAAALSTFLTNDVALFIVVPLTITLKKLCAIPVNRLIIFEALAVNAGSLLTPVGNPQNILLWGRSGLSFAEFS
GQMAPLAVMMMLTLLLLCWFCFPGRALQYHTGTRSPQWQPRLVWSCLALYVVFLTALELRQELWGLVLVAAGFIVLARRV
IVSVDWTLLLVFMAMFIDVHLLTQLPALQGVFNQVGALSHLGLWLTAIGLSQVISNVPSTILLLNYVPASTLLAWAVNIG
GFGLLPGSLANLIALRMANDRRIWWRFHFYSLPMLAWAALVGYGLLQLMP
>Mature_370_residues
MNLAFLRALRRDRFFQLLIIVGMALSLFVPFAPRAWPGAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMTRRFHTERQ
LAMFLVLAAAALSTFLTNDVALFIVVPLTITLKKLCAIPVNRLIIFEALAVNAGSLLTPVGNPQNILLWGRSGLSFAEFS
GQMAPLAVMMMLTLLLLCWFCFPGRALQYHTGTRSPQWQPRLVWSCLALYVVFLTALELRQELWGLVLVAAGFIVLARRV
IVSVDWTLLLVFMAMFIDVHLLTQLPALQGVFNQVGALSHLGLWLTAIGLSQVISNVPSTILLLNYVPASTLLAWAVNIG
GFGLLPGSLANLIALRMANDRRIWWRFHFYSLPMLAWAALVGYGLLQLMP

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=370, Percent_Identity=83.5135135135135, Blast_Score=599, Evalue=1e-172,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 41161; Mature: 41161

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAFLRALRRDRFFQLLIIVGMALSLFVPFAPRAWPGAIDWHTIITLSGLMLLTKGVEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SGYFDVLGRKMTRRFHTERQLAMFLVLAAAALSTFLTNDVALFIVVPLTITLKKLCAIPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
NRLIIFEALAVNAGSLLTPVGNPQNILLWGRSGLSFAEFSGQMAPLAVMMMLTLLLLCWF
HHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
CFPGRALQYHTGTRSPQWQPRLVWSCLALYVVFLTALELRQELWGLVLVAAGFIVLARRV
HCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSVDWTLLLVFMAMFIDVHLLTQLPALQGVFNQVGALSHLGLWLTAIGLSQVISNVPST
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ILLLNYVPASTLLAWAVNIGGFGLLPGSLANLIALRMANDRRIWWRFHFYSLPMLAWAAL
EEHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHH
VGYGLLQLMP
HHHHHHHCCC
>Mature Secondary Structure
MNLAFLRALRRDRFFQLLIIVGMALSLFVPFAPRAWPGAIDWHTIITLSGLMLLTKGVEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SGYFDVLGRKMTRRFHTERQLAMFLVLAAAALSTFLTNDVALFIVVPLTITLKKLCAIPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
NRLIIFEALAVNAGSLLTPVGNPQNILLWGRSGLSFAEFSGQMAPLAVMMMLTLLLLCWF
HHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
CFPGRALQYHTGTRSPQWQPRLVWSCLALYVVFLTALELRQELWGLVLVAAGFIVLARRV
HCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSVDWTLLLVFMAMFIDVHLLTQLPALQGVFNQVGALSHLGLWLTAIGLSQVISNVPST
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ILLLNYVPASTLLAWAVNIGGFGLLPGSLANLIALRMANDRRIWWRFHFYSLPMLAWAAL
EEHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHH
VGYGLLQLMP
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]