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The map label for this gene is sseD [H]

Identifier: 29141730

GI number: 29141730

Start: 1340873

End: 1341460

Strand: Direct

Name: sseD [H]

Synonym: t1269

Alternate gene names: 29141730

Gene position: 1340873-1341460 (Clockwise)

Preceding gene: 29141729

Following gene: 29141731

Centisome position: 27.98

GC content: 48.98

Gene sequence:

>588_bases
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCGCCTTCCTTGTTAACGCCTTCTTCCACTCCATCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCG
ATATCATGCGCAGCTATAACGTAGAAAAACAACGACTGTCCTGGGAACTGCAAGTCAATGTTTTGCAGACGCAAATGAAA
ACAATTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCCATGTTGTCGGGAGTGCTGACGATAGGATTAGG
GGCTGTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGACACACCGCTGGGGGAGTCATGGGCCTGGGGTCCG
GTGTAGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCACAATCTTATAATAAATCC
CTGACGGACATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTTACGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Upstream 100 bases:

>100_bases
TAGCGGTGCCGCGCTTAGAGGTGTATTAGATACCATTGATCACTATAGTAGCGTTCAGGCGAGAATAGCTGGCTGGCGCG
CTTAATCTGAGGATAAAAAT

Downstream 100 bases:

>100_bases
ATATGGTGCAAGAAATAGAGCAATGGTTGCGTCGGCATCAGGTGTTTACTGAGCCTGCATATTTAGGGGAGACCGCCATA
TTACTTGGGCAGCAGTTTAT

Product: pathogenicity island effector protein

Products: NA

Alternate protein names: Secretion system effector D [H]

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMK
TIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGSGVAQRQSDQDKAIADLQQNGAQSYNKS
LTDIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

Sequences:

>Translated_195_residues
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMK
TIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGSGVAQRQSDQDKAIADLQQNGAQSYNKS
LTDIMEKATEIMQQIIGVGSSLVTVLAEILRALTR
>Mature_195_residues
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMK
TIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGSGVAQRQSDQDKAIADLQQNGAQSYNKS
LTDIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

Specific function: Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. May act as a translocator that mediates translocation of SPI-2 TTSS effector proteins from intraphagosomal bacterial cells into the host cells [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted. Cell surface. Note=Secreted via type III secretion system 2 (SPI-2 TTSS). After secretion, localizes mainly on the surface of the bacterial cell [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20610; Mature: 20610

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYN
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VEKQRLSWELQVNVLQTQMKTIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHH
VGHTAGGVMGLGSGVAQRQSDQDKAIADLQQNGAQSYNKSLTDIMEKATEIMQQIIGVGS
HCCCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SLVTVLAEILRALTR
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYN
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VEKQRLSWELQVNVLQTQMKTIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHH
VGHTAGGVMGLGSGVAQRQSDQDKAIADLQQNGAQSYNKSLTDIMEKATEIMQQIIGVGS
HCCCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SLVTVLAEILRALTR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9786193; 9786194; 11677609 [H]