Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572925

Identifier: 28572925

GI number: 28572925

Start: 888171

End: 888836

Strand: Direct

Name: 28572925

Synonym: TW784

Alternate gene names: NA

Gene position: 888171-888836 (Clockwise)

Preceding gene: 28572924

Following gene: 28572926

Centisome position: 95.92

GC content: 45.35

Gene sequence:

>666_bases
GTGGGTATCGGGATTTTAGAAAGAATTGAGCAGAGTATAGCGAAAATTGTTGACTTAGTTTTTACAAAAACTTTTCGTTC
CCAGATTCAGCCCACAGAGCTGACGAGCGCTCTAAAGCATAAAATAGACTCGACGGCGTGCCTTGTGCCCAACAGAAGAT
CGTCTGATGCTCCCAGTCATTATGTGATTGAGGTGAGTCCACGAGGTGGCGAGCACATCCTGTCACGCGCTGACCAGCTT
GCCAAAGAGCTCAGTGAATTCGCGAAAGAGCATGTCAGGGTGCAAGGTTACAGGTATCCCGGCGGAATAGACGTAACTGT
CGTGCCGAGCAAGAATCTTTCAAGAGGGTTTACGATCGAGGTGGTAAACCGGTCTGTTGCATGGCGAGCATTCCTGATAA
TCGGTGATAAGAGATATCCAATAGAACAATCCGTCATCATAGGCCGGGGATTAAGTGCTGATGTTCGCCTTGCAGATTCG
TCTGTTAGCAGGCAGCACGCCAAGATAGACGTTGACGGAGAAAAAGCAATGATTGTTGATATAGGTTCATCTAATGGATT
CAAAGTAAATGGCAAAAGGTGCACCAAGGCTACGCTAAAAAATAACTCACTAATAAATCTTGGCAGGCAAAAAATTCTAT
TTGTTTTTCTGCCGATCTTTGATTAG

Upstream 100 bases:

>100_bases
CGCGTCTACCAATTCCGCCACTCGCGCGGGCCAAATCAACCCTCGGAATAAGTTCGCAATAGTAAACAATACAATAGACC
CGCAGGAATGGAGCATGCGT

Downstream 100 bases:

>100_bases
TAAACTCAGTGCCAATAGCGCATCTGACATTGTTGACTGCGACATTGTTGACTGCGACATTGTCTGCTTTGGGTATTGAA
AAGCAGCATGGACTATCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: FHA Domain-Containing Protein; Forkhead-Associated Protein; FHA Domain Protein

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MGIGILERIEQSIAKIVDLVFTKTFRSQIQPTELTSALKHKIDSTACLVPNRRSSDAPSHYVIEVSPRGGEHILSRADQL
AKELSEFAKEHVRVQGYRYPGGIDVTVVPSKNLSRGFTIEVVNRSVAWRAFLIIGDKRYPIEQSVIIGRGLSADVRLADS
SVSRQHAKIDVDGEKAMIVDIGSSNGFKVNGKRCTKATLKNNSLINLGRQKILFVFLPIFD

Sequences:

>Translated_221_residues
MGIGILERIEQSIAKIVDLVFTKTFRSQIQPTELTSALKHKIDSTACLVPNRRSSDAPSHYVIEVSPRGGEHILSRADQL
AKELSEFAKEHVRVQGYRYPGGIDVTVVPSKNLSRGFTIEVVNRSVAWRAFLIIGDKRYPIEQSVIIGRGLSADVRLADS
SVSRQHAKIDVDGEKAMIVDIGSSNGFKVNGKRCTKATLKNNSLINLGRQKILFVFLPIFD
>Mature_220_residues
GIGILERIEQSIAKIVDLVFTKTFRSQIQPTELTSALKHKIDSTACLVPNRRSSDAPSHYVIEVSPRGGEHILSRADQLA
KELSEFAKEHVRVQGYRYPGGIDVTVVPSKNLSRGFTIEVVNRSVAWRAFLIIGDKRYPIEQSVIIGRGLSADVRLADSS
VSRQHAKIDVDGEKAMIVDIGSSNGFKVNGKRCTKATLKNNSLINLGRQKILFVFLPIFD

Specific function: Unknown

COG id: COG1716

COG function: function code T; FOG: FHA domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24473; Mature: 24341

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50006 FHA_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIGILERIEQSIAKIVDLVFTKTFRSQIQPTELTSALKHKIDSTACLVPNRRSSDAPSH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCE
YVIEVSPRGGEHILSRADQLAKELSEFAKEHVRVQGYRYPGGIDVTVVPSKNLSRGFTIE
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCCCEEEE
VVNRSVAWRAFLIIGDKRYPIEQSVIIGRGLSADVRLADSSVSRQHAKIDVDGEKAMIVD
EECCCEEEEEEEEECCCCCCCCCCEEEECCCCCCEEECCCCCCCHHCEEEECCCEEEEEE
IGSSNGFKVNGKRCTKATLKNNSLINLGRQKILFVFLPIFD
ECCCCCEEECCCEEEEEECCCCCEEECCCCEEEEEEEECCC
>Mature Secondary Structure 
GIGILERIEQSIAKIVDLVFTKTFRSQIQPTELTSALKHKIDSTACLVPNRRSSDAPSH
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCE
YVIEVSPRGGEHILSRADQLAKELSEFAKEHVRVQGYRYPGGIDVTVVPSKNLSRGFTIE
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCCCEEEE
VVNRSVAWRAFLIIGDKRYPIEQSVIIGRGLSADVRLADSSVSRQHAKIDVDGEKAMIVD
EECCCEEEEEEEEECCCCCCCCCCEEEECCCCCCEEECCCCCCCHHCEEEECCCEEEEEE
IGSSNGFKVNGKRCTKATLKNNSLINLGRQKILFVFLPIFD
ECCCCCEEECCCEEEEEECCCCCEEECCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA