Definition | Tropheryma whipplei TW08/27, complete genome. |
---|---|
Accession | NC_004551 |
Length | 925,938 |
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The map label for this gene is rsrIM [H]
Identifier: 28572924
GI number: 28572924
Start: 887009
End: 887890
Strand: Direct
Name: rsrIM [H]
Synonym: TW783
Alternate gene names: 28572924
Gene position: 887009-887890 (Clockwise)
Preceding gene: 28572923
Following gene: 28572925
Centisome position: 95.8
GC content: 45.92
Gene sequence:
>882_bases GTGCGGAACGGTGGTACCTGCTGGAGTCCAGACGGAGACAACCTTGTGGTGCAAGGTAATAACATTGACTTCCTTCACAA ATTACCTGATGACTCCTTCCAACTCATATACATAGACCCACCATTCAACACGGGTAAACGACAAACCAGACAATGCAGCA AGATGGTCAGATCACCCTACGGTGAACAGATCGGATTTTGCGGAAACAGGTACAAAATACTCTCGGAGAGTAGGACCGAA TATGCAGATATGTTCGATGATTACCTGGGATTCCTAAAACCGCGACTGCACGAAGCATGGCGGCTCCTCAAGCCGGAAGG GATGTTCTATCTACATCTTGATTACCGGGAGGTGCACTATGCAAAAATCCTACTGGATTCCATCTTTGGGCGCGATTCAT TTATAAACGAGATCATTTGGGCGTATGACTACGGAGCAAAGACAAAAAGGAGATGGCCCGCAAAGCATGACAATATCCTC GTATACGCCAAAGATCCACGAAAATATCTATTCGATAGCGAAAATGTTGATCGGGAGCCGTACATGGCCCCAGGGCTTGT AACTCCTGATAAAGCGAAACGTGGAAAATTACCAACAGACGTTTGGTGGCACACAATAGTGTCACCAACCGGAAAAGAAA AGACTGGGTATCCAACGCAAAAACCCGAGGGGGTTTTGAGGCGTATAATTCAAGCAAGCAGCCGTCCAAATGATTGGGTG CTTGATTTTTTTGCTGGCAGCGGAACCACTGGGATTGTTGCGGGCAAATTGGGTCGTAAATTTGTTCTGATTGACAACAG TCCTCAAGCCGTGAAAATAATGAAATTGAGAATAGATCGGAGTCTGTCAGAAAATCCAGTCAGGTACACAAAGCTGTATT AA
Upstream 100 bases:
>100_bases TAAGACAGTGGCACATAACGGGCATGCTCAATGGGTCTGTCAGATCAATCTTCGTATGTCTCACGCTGGGCTAAAGAAGC GCCTCCACTAGAATGATCGG
Downstream 100 bases:
>100_bases CAAAACCTGGATTATCTGGTGTTGGGCAGTGAATCTCACTTATACGTCGCTGGGCGCGCCTGTTGATCCCAGTCAAGTGT CTCATAAGGGTCAATATGCG
Product: DNA methylase
Products: NA
Alternate protein names: M.RsrI; Adenine-specific methyltransferase RsrI [H]
Number of amino acids: Translated: 293; Mature: 293
Protein sequence:
>293_residues MRNGGTCWSPDGDNLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPYGEQIGFCGNRYKILSESRTE YADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHYAKILLDSIFGRDSFINEIIWAYDYGAKTKRRWPAKHDNIL VYAKDPRKYLFDSENVDREPYMAPGLVTPDKAKRGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWV LDFFAGSGTTGIVAGKLGRKFVLIDNSPQAVKIMKLRIDRSLSENPVRYTKLY
Sequences:
>Translated_293_residues MRNGGTCWSPDGDNLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPYGEQIGFCGNRYKILSESRTE YADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHYAKILLDSIFGRDSFINEIIWAYDYGAKTKRRWPAKHDNIL VYAKDPRKYLFDSENVDREPYMAPGLVTPDKAKRGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWV LDFFAGSGTTGIVAGKLGRKFVLIDNSPQAVKIMKLRIDRSLSENPVRYTKLY >Mature_293_residues MRNGGTCWSPDGDNLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPYGEQIGFCGNRYKILSESRTE YADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHYAKILLDSIFGRDSFINEIIWAYDYGAKTKRRWPAKHDNIL VYAKDPRKYLFDSENVDREPYMAPGLVTPDKAKRGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWV LDFFAGSGTTGIVAGKLGRKFVLIDNSPQAVKIMKLRIDRSLSENPVRYTKLY
Specific function: This methylase recognizes the double-stranded sequence GAATTC, causes specific methylation on A-? on both strands, and protects the DNA from cleavage by the RsrI endonuclease [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI87082238, Length=272, Percent_Identity=31.25, Blast_Score=110, Evalue=8e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 33926; Mature: 33926
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNGGTCWSPDGDNLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPY CCCCCCCCCCCCCEEEEECCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC GEQIGFCGNRYKILSESRTEYADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHY CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHH AKILLDSIFGRDSFINEIIWAYDYGAKTKRRWPAKHDNILVYAKDPRKYLFDSENVDREP HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCCC YMAPGLVTPDKAKRGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWV CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE LDFFAGSGTTGIVAGKLGRKFVLIDNSPQAVKIMKLRIDRSLSENPVRYTKLY EEEECCCCCCEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEECC >Mature Secondary Structure MRNGGTCWSPDGDNLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTRQCSKMVRSPY CCCCCCCCCCCCCEEEEECCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC GEQIGFCGNRYKILSESRTEYADMFDDYLGFLKPRLHEAWRLLKPEGMFYLHLDYREVHY CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHH AKILLDSIFGRDSFINEIIWAYDYGAKTKRRWPAKHDNILVYAKDPRKYLFDSENVDREP HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCCC YMAPGLVTPDKAKRGKLPTDVWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWV CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE LDFFAGSGTTGIVAGKLGRKFVLIDNSPQAVKIMKLRIDRSLSENPVRYTKLY EEEECCCCCCEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2690017; 2602165; 11024175 [H]