Definition | Tropheryma whipplei TW08/27, complete genome. |
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Accession | NC_004551 |
Length | 925,938 |
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The map label for this gene is 28572926
Identifier: 28572926
GI number: 28572926
Start: 889052
End: 889501
Strand: Direct
Name: 28572926
Synonym: TW785
Alternate gene names: NA
Gene position: 889052-889501 (Clockwise)
Preceding gene: 28572925
Following gene: 28572927
Centisome position: 96.02
GC content: 45.56
Gene sequence:
>450_bases ATGAACGAGTTTATATTTTTTACACTAAAAGTCGGATTTTTGGGGCTTCTGTGGATCTTTGTTTTGTGCTCAATTGTTAT TTTGTACAAAAGCCTGCCGAAGGGGAGGGATAATCTCGCGACACCCCGGATAAGCAGTAAGAAATTTTCCCCAAGCGTTG GGGCAAAAATGGTGACTGTCAAAACGGAATGCTCGGAACAAAAGATACCAATCAAGCAACCGAGGATGCTAATTGGTAGA ACCCCTGACTGTCAAATAGCTCTGTCTGATCGTTTCTCTTCTGGGCACCACGCAGAATTAGTTCTCACGGAATCTGGATG GAAAGTTCGCGACCTTGGTTCCAGTAACGGGACATTTGTTGACGGGAAGCGAATTCCATCAGGGCAGGCAATTACCCTGA GGATTGGTGAGGAGCTTAAAATCGGTAGCAGCGCTATCAGATTGTCCTGA
Upstream 100 bases:
>100_bases CTGGAGATCTGCGCTACGAAATTTAGGTATTAAACAACAAATAAACATGGGGTTCGTGCCAGGTCACATGCTATGGCATG CTGGGCATCTGGTTTAGATA
Downstream 100 bases:
>100_bases ACGGGTCTATGCGTGCTCTAATCACGACAATGCAATATAAGTCAGCGCGTGCAGGCTGTATGTGAAACAAGATTTTACGC GCCTATTCTCACCCAATGGA
Product: secreted protein
Products: NA
Alternate protein names: FHA Domain Containing Protein; Forkhead-Associated Protein; Protein Containing Forkhead-Associated Domain; Secreted Protein
Number of amino acids: Translated: 149; Mature: 149
Protein sequence:
>149_residues MNEFIFFTLKVGFLGLLWIFVLCSIVILYKSLPKGRDNLATPRISSKKFSPSVGAKMVTVKTECSEQKIPIKQPRMLIGR TPDCQIALSDRFSSGHHAELVLTESGWKVRDLGSSNGTFVDGKRIPSGQAITLRIGEELKIGSSAIRLS
Sequences:
>Translated_149_residues MNEFIFFTLKVGFLGLLWIFVLCSIVILYKSLPKGRDNLATPRISSKKFSPSVGAKMVTVKTECSEQKIPIKQPRMLIGR TPDCQIALSDRFSSGHHAELVLTESGWKVRDLGSSNGTFVDGKRIPSGQAITLRIGEELKIGSSAIRLS >Mature_149_residues MNEFIFFTLKVGFLGLLWIFVLCSIVILYKSLPKGRDNLATPRISSKKFSPSVGAKMVTVKTECSEQKIPIKQPRMLIGR TPDCQIALSDRFSSGHHAELVLTESGWKVRDLGSSNGTFVDGKRIPSGQAITLRIGEELKIGSSAIRLS
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16410; Mature: 16410
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEFIFFTLKVGFLGLLWIFVLCSIVILYKSLPKGRDNLATPRISSKKFSPSVGAKMVTV CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE KTECSEQKIPIKQPRMLIGRTPDCQIALSDRFSSGHHAELVLTESGWKVRDLGSSNGTFV ECCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCEE DGKRIPSGQAITLRIGEELKIGSSAIRLS ECCCCCCCCEEEEEECCCEEECCEEEECC >Mature Secondary Structure MNEFIFFTLKVGFLGLLWIFVLCSIVILYKSLPKGRDNLATPRISSKKFSPSVGAKMVTV CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE KTECSEQKIPIKQPRMLIGRTPDCQIALSDRFSSGHHAELVLTESGWKVRDLGSSNGTFV ECCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCEE DGKRIPSGQAITLRIGEELKIGSSAIRLS ECCCCCCCCEEEEEECCCEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA