Definition | Tropheryma whipplei TW08/27, complete genome. |
---|---|
Accession | NC_004551 |
Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is 28572919
Identifier: 28572919
GI number: 28572919
Start: 882521
End: 882823
Strand: Direct
Name: 28572919
Synonym: TW778
Alternate gene names: NA
Gene position: 882521-882823 (Clockwise)
Preceding gene: 28572916
Following gene: 28572923
Centisome position: 95.31
GC content: 46.2
Gene sequence:
>303_bases TTGGGCATATCAACTAAAGTACAGTGCCGTGTATTACAAGGGTTGGGCACGCTATTCGACATGTTAACTGTGCTGCTTGA TGGATTTGCGAGAGGAAGTTCGCTTGTTGCAAATTCGGCTGCGAAGAAACAGCGACACAACAACAGCTATCGGGAGGATG ATAAGCGTAAAAATAAACAGCCTATTACCCATAAGGCGACTGAGTCTTGTAAAGCAAGATGTGTCAGCAAGGCGCGCGGG AAGATTGACGCTGTAGCGAATGTCACGCAATGTGTCCGAAAGCTTTTTTCTGGCCAAATATGA
Upstream 100 bases:
>100_bases GCGAGAATGGCACGCGGCGACAAGACGACTGAGGGGAGAGGTGCATGCTATGGAGCGCGAACACGCCTTGCGCAAATAAT TACAGCTTAGTAAGAGTCTT
Downstream 100 bases:
>100_bases CCTGATCCACGGGTTATCTGAATCAGCATCTTCCCATTCCTCGTACACATCGTCAGTATTTTTCACTATCACACCTGCGG TTCACTATCACGCACACCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 100; Mature: 99
Protein sequence:
>100_residues MGISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQPITHKATESCKARCVSKARG KIDAVANVTQCVRKLFSGQI
Sequences:
>Translated_100_residues MGISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQPITHKATESCKARCVSKARG KIDAVANVTQCVRKLFSGQI >Mature_99_residues GISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQPITHKATESCKARCVSKARGK IDAVANVTQCVRKLFSGQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10995; Mature: 10864
Theoretical pI: Translated: 10.88; Mature: 10.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHCCC PITHKATESCKARCVSKARGKIDAVANVTQCVRKLFSGQI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHCCC PITHKATESCKARCVSKARGKIDAVANVTQCVRKLFSGQI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA