Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572919

Identifier: 28572919

GI number: 28572919

Start: 882521

End: 882823

Strand: Direct

Name: 28572919

Synonym: TW778

Alternate gene names: NA

Gene position: 882521-882823 (Clockwise)

Preceding gene: 28572916

Following gene: 28572923

Centisome position: 95.31

GC content: 46.2

Gene sequence:

>303_bases
TTGGGCATATCAACTAAAGTACAGTGCCGTGTATTACAAGGGTTGGGCACGCTATTCGACATGTTAACTGTGCTGCTTGA
TGGATTTGCGAGAGGAAGTTCGCTTGTTGCAAATTCGGCTGCGAAGAAACAGCGACACAACAACAGCTATCGGGAGGATG
ATAAGCGTAAAAATAAACAGCCTATTACCCATAAGGCGACTGAGTCTTGTAAAGCAAGATGTGTCAGCAAGGCGCGCGGG
AAGATTGACGCTGTAGCGAATGTCACGCAATGTGTCCGAAAGCTTTTTTCTGGCCAAATATGA

Upstream 100 bases:

>100_bases
GCGAGAATGGCACGCGGCGACAAGACGACTGAGGGGAGAGGTGCATGCTATGGAGCGCGAACACGCCTTGCGCAAATAAT
TACAGCTTAGTAAGAGTCTT

Downstream 100 bases:

>100_bases
CCTGATCCACGGGTTATCTGAATCAGCATCTTCCCATTCCTCGTACACATCGTCAGTATTTTTCACTATCACACCTGCGG
TTCACTATCACGCACACCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MGISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQPITHKATESCKARCVSKARG
KIDAVANVTQCVRKLFSGQI

Sequences:

>Translated_100_residues
MGISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQPITHKATESCKARCVSKARG
KIDAVANVTQCVRKLFSGQI
>Mature_99_residues
GISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQPITHKATESCKARCVSKARGK
IDAVANVTQCVRKLFSGQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10995; Mature: 10864

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHCCC
PITHKATESCKARCVSKARGKIDAVANVTQCVRKLFSGQI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GISTKVQCRVLQGLGTLFDMLTVLLDGFARGSSLVANSAAKKQRHNNSYREDDKRKNKQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHCCC
PITHKATESCKARCVSKARGKIDAVANVTQCVRKLFSGQI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA