Click here to switch to the map view.

The map label for this gene is 28378551

Identifier: 28378551

GI number: 28378551

Start: 1718310

End: 1718642

Strand: Direct

Name: 28378551

Synonym: lp_1900

Alternate gene names: NA

Gene position: 1718310-1718642 (Clockwise)

Preceding gene: 28378514

Following gene: 28378557

Centisome position: 51.94

GC content: 40.84

Gene sequence:

>333_bases
ATGTTTACTAGGGTTTCACCGCCGTCTCGTCGTAATTATATCAGCCTAATTAAAGCCTTAATATCCCGTTATTACCTAAT
TGCTTTTTCCTGTCGGTGTGTTAAAATAATTTTCATTGGGAGGTGTCGGAAAATGATGAGACAACTTACGATTATCTTTT
GGAGTGTCCTCTTCGGTGAAGTCATCGGCTATATCGGTGGCGCCCTCGAACAACTCTCCTATAATCCTGGTGAAATTGGC
ATCGTTGCCGCAATTTTTGCGCTAATCGTGGTCAACAGCATCACTTATATTACTAATCATTCCCAACCCGCTAAAGGTTC
AGATAATAAGTAA

Upstream 100 bases:

>100_bases
TTGATGACCAATCTTGTCCTCAGATATATTCGTTACTATTCATTATACCAAACAGTTGTTCTAAGCGGCAGTTTTAAGTC
ATCAGATAACGTGCACGGTT

Downstream 100 bases:

>100_bases
TTAAAAACAACCAGAGGCTTTGCTTCGCTTAGTCTCAGCACAACAAAAAAGACGAGTATCCCGATTGCGGTTGCTCGTCT
TTTTTTGTTGTGTGCTTGAC

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MFTRVSPPSRRNYISLIKALISRYYLIAFSCRCVKIIFIGRCRKMMRQLTIIFWSVLFGEVIGYIGGALEQLSYNPGEIG
IVAAIFALIVVNSITYITNHSQPAKGSDNK

Sequences:

>Translated_110_residues
MFTRVSPPSRRNYISLIKALISRYYLIAFSCRCVKIIFIGRCRKMMRQLTIIFWSVLFGEVIGYIGGALEQLSYNPGEIG
IVAAIFALIVVNSITYITNHSQPAKGSDNK
>Mature_110_residues
MFTRVSPPSRRNYISLIKALISRYYLIAFSCRCVKIIFIGRCRKMMRQLTIIFWSVLFGEVIGYIGGALEQLSYNPGEIG
IVAAIFALIVVNSITYITNHSQPAKGSDNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12395; Mature: 12395

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTRVSPPSRRNYISLIKALISRYYLIAFSCRCVKIIFIGRCRKMMRQLTIIFWSVLFGE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGYIGGALEQLSYNPGEIGIVAAIFALIVVNSITYITNHSQPAKGSDNK
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MFTRVSPPSRRNYISLIKALISRYYLIAFSCRCVKIIFIGRCRKMMRQLTIIFWSVLFGE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGYIGGALEQLSYNPGEIGIVAAIFALIVVNSITYITNHSQPAKGSDNK
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA