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The map label for this gene is yjgF [C]

Identifier: 28199581

GI number: 28199581

Start: 1989554

End: 1989937

Strand: Reverse

Name: yjgF [C]

Synonym: PD1706

Alternate gene names: 28199581

Gene position: 1989937-1989554 (Counterclockwise)

Preceding gene: 28199582

Following gene: 28199580

Centisome position: 78.97

GC content: 54.95

Gene sequence:

>384_bases
ATGTCCTTCCAGATCATCCATACCGAAAAAGCGCCGGCTGCGATCGGCCCGTATTCTCAGGCCGTGCGTGTTGGCAACAC
CGTGTATTTTTCAGGCCAGATTCCATTGGATCCAGCCACCGGTACCATTGTCGCTGGCGACCTCGCGGTCCAAGCCCGTC
GTGCATTCGATAACCTCAGAGCAGTTGCTGAGACTGCTAACGGCTCCCTCTCCAAAATCGTCCGTTTAGGGCTTTACCTG
ACTGACTTGGAGCAATTTTCTGTGGTCAATGCGGTGATGCAGGAATACTTTCAGGCCCCCTTCCCAGCACGCTCCACCAT
TCAGGTCTCCGGTTTACCCAAGGGCGCGGATTTCGAGGTGGATGCAGTGATGGTGATTGACTGA

Upstream 100 bases:

>100_bases
ATACCACTGACTTGTGATTCGTACCTAGATGCTGAGATTGCTGGCTCTTGAGCGGGCACCGATACAATGCACTTTTATTT
TCCATCGACTCCACATTCAA

Downstream 100 bases:

>100_bases
TCCCTGCTATGCCGCGTGCACGTTCGCATGCCATCGACTTGAACGTAGCTGGCAATGCCCCATTGTCGGTGCTGCCGCGG
GTTGGGCCGGTATTAGCTGG

Product: translation initiation inhibitor

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPLDPATGTIVAGDLAVQARRAFDNLRAVAETANGSLSKIVRLGLYL
TDLEQFSVVNAVMQEYFQAPFPARSTIQVSGLPKGADFEVDAVMVID

Sequences:

>Translated_127_residues
MSFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPLDPATGTIVAGDLAVQARRAFDNLRAVAETANGSLSKIVRLGLYL
TDLEQFSVVNAVMQEYFQAPFPARSTIQVSGLPKGADFEVDAVMVID
>Mature_126_residues
SFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPLDPATGTIVAGDLAVQARRAFDNLRAVAETANGSLSKIVRLGLYLT
DLEQFSVVNAVMQEYFQAPFPARSTIQVSGLPKGADFEVDAVMVID

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=42.6229508196721, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=44.8, Blast_Score=111, Evalue=1e-26,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=42.4, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1787245, Length=102, Percent_Identity=29.4117647058824, Blast_Score=59, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=42.4, Blast_Score=108, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=43.4426229508197, Blast_Score=108, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=42.4, Blast_Score=108, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=35.8333333333333, Blast_Score=88, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=36.2745098039216, Blast_Score=86, Evalue=2e-18,
Organism=Drosophila melanogaster, GI19921376, Length=120, Percent_Identity=38.3333333333333, Blast_Score=90, Evalue=4e-19,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13604; Mature: 13472

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPLDPATGTIVAGDLAVQARRAFDNLR
CCEEEEECCCCCCCCCCCHHHEEECCEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHH
AVAETANGSLSKIVRLGLYLTDLEQFSVVNAVMQEYFQAPFPARSTIQVSGLPKGADFEV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCE
DAVMVID
EEEEEEC
>Mature Secondary Structure 
SFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPLDPATGTIVAGDLAVQARRAFDNLR
CEEEEECCCCCCCCCCCHHHEEECCEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHH
AVAETANGSLSKIVRLGLYLTDLEQFSVVNAVMQEYFQAPFPARSTIQVSGLPKGADFEV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCE
DAVMVID
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]