Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is hisB
Identifier: 28199151
GI number: 28199151
Start: 1473821
End: 1474948
Strand: Reverse
Name: hisB
Synonym: PD1265
Alternate gene names: 28199151
Gene position: 1474948-1473821 (Counterclockwise)
Preceding gene: 28199152
Following gene: 28199150
Centisome position: 58.53
GC content: 56.74
Gene sequence:
>1128_bases ATGACCCCCATCGTGTTTATTGACCGTGACGGCACGCTCATTGAAGAGCCGCCTGATTTTCAGATTGATGCCTACGAAAA ACTGCGCCTTGTCAACGGCGTGATCCCGGCATTGCTGAAGCTCCGTGATGCCGGCTATCACTTTGTGATCGTCACCAACC AAGATGGATTGGGCAGCCCCACGTATCCCCAAGCCAGCTTTGATGGCCCCAATGCGTTGATGCTGCAGATTTTTAGTAGC CAAGGCATCGTCTTCCGCGATGTGCTGATCGATCGTAGCTGGCCGGCCGACAACGCGCCCACTCGTAAACCAGGCATCGG CTTGATGGTCGCCTACCTTCAAGATCGCGACATTGATTGGGCGCGCTCGGCAATGGTGGGCGATCGCCCCACAGATCTGC AATTTGCCGAGAATCTCAACATTCGCGGATTCCAATTACGTACCCCGCAATTTGGTGGTGACTGGGATTGGGACGGCATT GCTCACACCTTGGCCGATGCGCCGCGCCGCGCCGTGGTACAGCGTCACACCAAGGAGACAAACATCCGTGTCGAGATTGA TTTGGATGGCGCACCCCAGGCGCGGATCACTACCGGATTACCGTTTTTTGATCATATGCTCGAGCAGATCGCCAAACATG CTGGCATTTCCCTACACATCAGCGCTGTTGGGGATCTGCATATCGACGAACATCACACAATAGAAGATACCGGCTTGGCG CTAGGTCAGGCAGTGCGCCAAGCCTTGGGGGATAAACGCGGTATTGGCCGCTATGGATTCGATCCGCCCCAGCTGCCGTG GCAGGTGAGCGGCGCGGCGGCACACGGTGGCTTTACCCTACCGATGGATGAGACCCAAGCCAGCGCTGTGTTGGACTTCA GCGGCCGCCCGTATTTTGTCTTTGAAGGAACCTTCGTCCGTGAGCGTGTCGGCGATATGCCCACCGAACTGGTACCGCAC TTTTTCCGCTCCCTGTGTGATGCCTCTGGGATGAACTTGCACTTGAGCGTGCATGGCGACAACGACCATCACAAAGTAGA AGCGTGTTTCAAGGCGCTGGCGCGTGCATTGCGTCAGGCGTTACAACGCCACGGCCACGTGCTTCCTTCTACCAAGGGGG CGTTATGA
Upstream 100 bases:
>100_bases CCGCACCGCAGTTGCATGATGCCTTGCGGCTGACCGTGGGAACCCCCGAACAAAACACACGTCTCCTGGCCGTGTTGCGT GACATCCAGGCGGTGCCCGC
Downstream 100 bases:
>100_bases CCGAGGTTGCTTTGATTGATGCCGGTGGTGCCAATCTTGGTTCGGTGCGCTACGCCTTGCAGCGTTTGGGGGTAGAACCG CGCTTAGTGTGCGATGCCCG
Product: imidazole glycerol-phosphate dehydratase/histidinol phosphatase
Products: NA
Alternate protein names: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; IGPD
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MTPIVFIDRDGTLIEEPPDFQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSPTYPQASFDGPNALMLQIFSS QGIVFRDVLIDRSWPADNAPTRKPGIGLMVAYLQDRDIDWARSAMVGDRPTDLQFAENLNIRGFQLRTPQFGGDWDWDGI AHTLADAPRRAVVQRHTKETNIRVEIDLDGAPQARITTGLPFFDHMLEQIAKHAGISLHISAVGDLHIDEHHTIEDTGLA LGQAVRQALGDKRGIGRYGFDPPQLPWQVSGAAAHGGFTLPMDETQASAVLDFSGRPYFVFEGTFVRERVGDMPTELVPH FFRSLCDASGMNLHLSVHGDNDHHKVEACFKALARALRQALQRHGHVLPSTKGAL
Sequences:
>Translated_375_residues MTPIVFIDRDGTLIEEPPDFQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSPTYPQASFDGPNALMLQIFSS QGIVFRDVLIDRSWPADNAPTRKPGIGLMVAYLQDRDIDWARSAMVGDRPTDLQFAENLNIRGFQLRTPQFGGDWDWDGI AHTLADAPRRAVVQRHTKETNIRVEIDLDGAPQARITTGLPFFDHMLEQIAKHAGISLHISAVGDLHIDEHHTIEDTGLA LGQAVRQALGDKRGIGRYGFDPPQLPWQVSGAAAHGGFTLPMDETQASAVLDFSGRPYFVFEGTFVRERVGDMPTELVPH FFRSLCDASGMNLHLSVHGDNDHHKVEACFKALARALRQALQRHGHVLPSTKGAL >Mature_374_residues TPIVFIDRDGTLIEEPPDFQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSPTYPQASFDGPNALMLQIFSSQ GIVFRDVLIDRSWPADNAPTRKPGIGLMVAYLQDRDIDWARSAMVGDRPTDLQFAENLNIRGFQLRTPQFGGDWDWDGIA HTLADAPRRAVVQRHTKETNIRVEIDLDGAPQARITTGLPFFDHMLEQIAKHAGISLHISAVGDLHIDEHHTIEDTGLAL GQAVRQALGDKRGIGRYGFDPPQLPWQVSGAAAHGGFTLPMDETQASAVLDFSGRPYFVFEGTFVRERVGDMPTELVPHF FRSLCDASGMNLHLSVHGDNDHHKVEACFKALARALRQALQRHGHVLPSTKGAL
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family
Homologues:
Organism=Escherichia coli, GI87082027, Length=372, Percent_Identity=50.5376344086022, Blast_Score=367, Evalue=1e-103, Organism=Escherichia coli, GI1786399, Length=187, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6324776, Length=233, Percent_Identity=41.6309012875536, Blast_Score=172, Evalue=7e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HIS7_XYLF2 (B2I5X9)
Other databases:
- EMBL: CP001011 - RefSeq: YP_001830042.1 - ProteinModelPortal: B2I5X9 - GeneID: 6202227 - GenomeReviews: CP001011_GR - KEGG: xfn:XfasM23_1350 - HOGENOM: HBG289010 - OMA: QDGLGTP - ProtClustDB: PRK05446 - GO: GO:0005737 - HAMAP: MF_01022 - InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR020566 - InterPro: IPR005954 - InterPro: IPR006543 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR020568 - Gene3D: G3DSA:3.40.50.1000 - TIGRFAMs: TIGR01662 - TIGRFAMs: TIGR01261 - TIGRFAMs: TIGR01656
Pfam domain/function: PF00475 IGPD; SSF54211 Ribosomal_S5_D2-typ_fold; SSF56784 SSF56784
EC number: =3.1.3.15; =4.2.1.19
Molecular weight: Translated: 41472; Mature: 41341
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00954 IGP_DEHYDRATASE_1; PS00955 IGP_DEHYDRATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPIVFIDRDGTLIEEPPDFQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSP CCCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC TYPQASFDGPNALMLQIFSSQGIVFRDVLIDRSWPADNAPTRKPGIGLMVAYLQDRDIDW CCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCH ARSAMVGDRPTDLQFAENLNIRGFQLRTPQFGGDWDWDGIAHTLADAPRRAVVQRHTKET HHHHHCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCC NIRVEIDLDGAPQARITTGLPFFDHMLEQIAKHAGISLHISAVGDLHIDEHHTIEDTGLA EEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECEECCCCCCCHHHHHH LGQAVRQALGDKRGIGRYGFDPPQLPWQVSGAAAHGGFTLPMDETQASAVLDFSGRPYFV HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCEEEECCCCEEEE FEGTFVRERVGDMPTELVPHFFRSLCDASGMNLHLSVHGDNDHHKVEACFKALARALRQA ECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH LQRHGHVLPSTKGAL HHHCCCCCCCCCCCC >Mature Secondary Structure TPIVFIDRDGTLIEEPPDFQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSP CCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC TYPQASFDGPNALMLQIFSSQGIVFRDVLIDRSWPADNAPTRKPGIGLMVAYLQDRDIDW CCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCH ARSAMVGDRPTDLQFAENLNIRGFQLRTPQFGGDWDWDGIAHTLADAPRRAVVQRHTKET HHHHHCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCC NIRVEIDLDGAPQARITTGLPFFDHMLEQIAKHAGISLHISAVGDLHIDEHHTIEDTGLA EEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECEECCCCCCCHHHHHH LGQAVRQALGDKRGIGRYGFDPPQLPWQVSGAAAHGGFTLPMDETQASAVLDFSGRPYFV HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCEEEECCCCEEEE FEGTFVRERVGDMPTELVPHFFRSLCDASGMNLHLSVHGDNDHHKVEACFKALARALRQA ECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH LQRHGHVLPSTKGAL HHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA