Definition | Xylella fastidiosa Temecula1, complete genome. |
---|---|
Accession | NC_004556 |
Length | 2,519,802 |
Click here to switch to the map view.
The map label for this gene is 28199126
Identifier: 28199126
GI number: 28199126
Start: 1443184
End: 1443576
Strand: Reverse
Name: 28199126
Synonym: PD1239
Alternate gene names: NA
Gene position: 1443576-1443184 (Counterclockwise)
Preceding gene: 28199127
Following gene: 28199124
Centisome position: 57.29
GC content: 39.44
Gene sequence:
>393_bases GTGATAGGTGATTACATGTTAACGCAACAGCAGATAGATCATATTTATGAGATGTTAGGCGGGCCTTTGTGTTTTCTTTG GGGTTATATAGAAGATGCGCATGGAATTATAGGTACAAAAAAGGATCCGGACTCATTTGAAGAAAGAAAAAATGATTTCC TGTTTTTAGTAGGAAAATTACTGGATGAGGGAGAGCTCAAACTTGCCAAAAAGGGGAAATTTATGACAGGCACCACCGAG GAACAGGTAGAGATGTTTAGAAAATCATTTCCTACTTCAGATGAAGAGATGGAGTTTGGAGTTTGGTTCTTTGCAGACGA GTGTCCCGCTGGAGCAGTATGGGTATTTAAAGGAGAAGGAGAAAATGGTGAAGATTATTACGAATGGACATGA
Upstream 100 bases:
>100_bases CTTCTTCAGATCAACTAACTAAAGCCAGGTGGACGATTGATATAGAAAAGAACCCGACTTTGAGGGGAGTTACAGATCAA AGAGTTGAACTTAAATTTAG
Downstream 100 bases:
>100_bases GGTGTGTTGATGCGTTGCATGATGCGTCATTCATTTCATTCCTTGTTGCGATGATTTATTTAAATCCACAGATGCTGTGC CCCTCATGGGGCGGTATCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MIGDYMLTQQQIDHIYEMLGGPLCFLWGYIEDAHGIIGTKKDPDSFEERKNDFLFLVGKLLDEGELKLAKKGKFMTGTTE EQVEMFRKSFPTSDEEMEFGVWFFADECPAGAVWVFKGEGENGEDYYEWT
Sequences:
>Translated_130_residues MIGDYMLTQQQIDHIYEMLGGPLCFLWGYIEDAHGIIGTKKDPDSFEERKNDFLFLVGKLLDEGELKLAKKGKFMTGTTE EQVEMFRKSFPTSDEEMEFGVWFFADECPAGAVWVFKGEGENGEDYYEWT >Mature_130_residues MIGDYMLTQQQIDHIYEMLGGPLCFLWGYIEDAHGIIGTKKDPDSFEERKNDFLFLVGKLLDEGELKLAKKGKFMTGTTE EQVEMFRKSFPTSDEEMEFGVWFFADECPAGAVWVFKGEGENGEDYYEWT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15021; Mature: 15021
Theoretical pI: Translated: 4.07; Mature: 4.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGDYMLTQQQIDHIYEMLGGPLCFLWGYIEDAHGIIGTKKDPDSFEERKNDFLFLVGKL CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEEHH LDEGELKLAKKGKFMTGTTEEQVEMFRKSFPTSDEEMEFGVWFFADECPAGAVWVFKGEG HCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEECCC ENGEDYYEWT CCCCCCCCCC >Mature Secondary Structure MIGDYMLTQQQIDHIYEMLGGPLCFLWGYIEDAHGIIGTKKDPDSFEERKNDFLFLVGKL CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEEHH LDEGELKLAKKGKFMTGTTEEQVEMFRKSFPTSDEEMEFGVWFFADECPAGAVWVFKGEG HCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEECCC ENGEDYYEWT CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA