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The map label for this gene is 28199124

Identifier: 28199124

GI number: 28199124

Start: 1441223

End: 1441843

Strand: Reverse

Name: 28199124

Synonym: PD1237

Alternate gene names: NA

Gene position: 1441843-1441223 (Counterclockwise)

Preceding gene: 28199126

Following gene: 28199115

Centisome position: 57.22

GC content: 42.03

Gene sequence:

>621_bases
TTGGACTGTTTGATGATTACTTTAATTTTGATTGCTATGAATGCGGTGGTGTCCTGGTTGGCTTTCAATAATAGTCGTTT
GCTTGATCGGTTGGTTTTTTGGCCTCCGGCGATTGATCGTGATCACCAATATGATCGGTTGATTACGTATGGTTTTGTAC
ATGCCGATATTTCGCATTTATTGTTCAATATGGTGACGTTATATTTTTTTGGCAGCATGATTGAAGCCGTCATGGGCGAA
CTTACTGGGAGTCTATTGACTTATCCTTTGTTTTATTTAGGGGCGTTGTTGGTATCGATTTTGCCTAGTTATATTAAGAA
CCAGAAAAATCCAAAGTATCTGAGTCTTGGTGCTTCAGGCGCTGTGTCGGCTGTGTTGTTCGCCGCGGTATTGTTGCAGC
CTTGGGCCTTAATTGTTGTGCTGTTTATTCCTGCGCCTGCGATTTTTTATGCTGTTTTTTATGTTGGGTATAGTATTTGG
ATGGGGCGTCGCGGTGATGATGGAATTAATCATAGTGCACATCTTTCCGGTGCTGCTTTTGGTGTGGTGTTTATGTTGTG
TATGGAGCCGCAGTTGTTGCAGGTATTTTTGATGCAATTAACCATGCCACGTTTTGGTTGA

Upstream 100 bases:

>100_bases
TGGTATTGTTCGGTGCGCTGTTGCATCGTCGATTATTATTTTTTTTTTTTGAGTATTGGTGGCGTGTCGTTTCGAGTGCC
TGTAAGGTTATTTCACCATT

Downstream 100 bases:

>100_bases
GTTGACGTGCTGGGTGTTTTGATCCGGGGATGTGTAATGAGGTAGCCGCATGTTTGCGGGCAAGGACGGTGTGCTTTGGA
TGGCTGGATCGGCATATGTA

Product: hypothetical protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Peptidase; S54 Family Peptidase; Transmembrane Rhomboid Family Protein; Cytoplasmic Membrane Protein; Integral Membrane Protein; Intramembrane Protease

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MDCLMITLILIAMNAVVSWLAFNNSRLLDRLVFWPPAIDRDHQYDRLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGE
LTGSLLTYPLFYLGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIW
MGRRGDDGINHSAHLSGAAFGVVFMLCMEPQLLQVFLMQLTMPRFG

Sequences:

>Translated_206_residues
MDCLMITLILIAMNAVVSWLAFNNSRLLDRLVFWPPAIDRDHQYDRLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGE
LTGSLLTYPLFYLGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIW
MGRRGDDGINHSAHLSGAAFGVVFMLCMEPQLLQVFLMQLTMPRFG
>Mature_206_residues
MDCLMITLILIAMNAVVSWLAFNNSRLLDRLVFWPPAIDRDHQYDRLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGE
LTGSLLTYPLFYLGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIW
MGRRGDDGINHSAHLSGAAFGVVFMLCMEPQLLQVFLMQLTMPRFG

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23041; Mature: 23041

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCLMITLILIAMNAVVSWLAFNNSRLLDRLVFWPPAIDRDHQYDRLITYGFVHADISHL
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
LFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSILPSYIKNQKNPKYLSLGASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCH
AVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIWMGRRGDDGINHSAHLSGAAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
GVVFMLCMEPQLLQVFLMQLTMPRFG
HHHHHHHCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDCLMITLILIAMNAVVSWLAFNNSRLLDRLVFWPPAIDRDHQYDRLITYGFVHADISHL
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
LFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSILPSYIKNQKNPKYLSLGASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCH
AVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIWMGRRGDDGINHSAHLSGAAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
GVVFMLCMEPQLLQVFLMQLTMPRFG
HHHHHHHCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA