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The map label for this gene is yoaB [C]

Identifier: 28198978

GI number: 28198978

Start: 1287476

End: 1287820

Strand: Reverse

Name: yoaB [C]

Synonym: PD1086

Alternate gene names: 28198978

Gene position: 1287820-1287476 (Counterclockwise)

Preceding gene: 28198979

Following gene: 28198975

Centisome position: 51.11

GC content: 52.75

Gene sequence:

>345_bases
ATGTTGCAACGATTCGAAACCGGCGTGCGTATGTCCGAGATGACGGTTCACCGTGGGGTTTGCTATCTGGCGGGACAGGT
GTCTGAAGATGCCAGTGTTGGTATCCGGGGACAGACTGAGCAAGTGCTGGCAGAGATAGACCGACTCTTGGCGCTTGCGG
CTAGTGACAAGAGTAAGATATTGAGAGCTGAAATATTTCTGGCCGATATCAATGATTTTTCTGGGATGAACGAGGTTTGG
GATGCCTGGGTACCGCAGGGCTTCACGCCGGCGCGTATGACGGTACAAGCCAAATTGGCCGATCCGGCATGGAAGGTTGA
AATTATGGTGACTGCGGCACTTTAG

Upstream 100 bases:

>100_bases
TAATTTTACTCATTGCGGAGCTGATTATCACTCTAAGTTATTGATTATTAATGTTAAAATATGATGCATATAATGCTTAC
TTCAATTTGAGGTGCTTGGA

Downstream 100 bases:

>100_bases
TTAACTGTTCAAAGTGCTTATTGTCATTTGTTTGGTCGCCTTTTGATGATCACTAAGCGTTGGTTGCTATTCTAGATAGC
CGTGTTTTTCTTTCTTATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MLQRFETGVRMSEMTVHRGVCYLAGQVSEDASVGIRGQTEQVLAEIDRLLALAASDKSKILRAEIFLADINDFSGMNEVW
DAWVPQGFTPARMTVQAKLADPAWKVEIMVTAAL

Sequences:

>Translated_114_residues
MLQRFETGVRMSEMTVHRGVCYLAGQVSEDASVGIRGQTEQVLAEIDRLLALAASDKSKILRAEIFLADINDFSGMNEVW
DAWVPQGFTPARMTVQAKLADPAWKVEIMVTAAL
>Mature_114_residues
MLQRFETGVRMSEMTVHRGVCYLAGQVSEDASVGIRGQTEQVLAEIDRLLALAASDKSKILRAEIFLADINDFSGMNEVW
DAWVPQGFTPARMTVQAKLADPAWKVEIMVTAAL

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=111, Percent_Identity=45.945945945946, Blast_Score=98, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12585; Mature: 12585

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQRFETGVRMSEMTVHRGVCYLAGQVSEDASVGIRGQTEQVLAEIDRLLALAASDKSKI
CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
LRAEIFLADINDFSGMNEVWDAWVPQGFTPARMTVQAKLADPAWKVEIMVTAAL
EEEEEEEEECCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEEEEEECC
>Mature Secondary Structure
MLQRFETGVRMSEMTVHRGVCYLAGQVSEDASVGIRGQTEQVLAEIDRLLALAASDKSKI
CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
LRAEIFLADINDFSGMNEVWDAWVPQGFTPARMTVQAKLADPAWKVEIMVTAAL
EEEEEEEEECCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA