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The map label for this gene is rpoZ

Identifier: 239618211

GI number: 239618211

Start: 1979626

End: 1979865

Strand: Reverse

Name: rpoZ

Synonym: Kole_1847

Alternate gene names: 239618211

Gene position: 1979865-1979626 (Counterclockwise)

Preceding gene: 239618212

Following gene: 239618210

Centisome position: 86.0

GC content: 43.33

Gene sequence:

>240_bases
ATGTCTGTGATAATTAATTACGACAAACTTCTCAAAAGGATAAGGCATAAGTACGCTATCCCTATAGCCGCTGCGCGTAG
AGCCGAGGGTCTAAAAGACTTTGGTAGGCCAAAACTCGACCCCCAAATGGTGAAACAAGCCGGCGACAAGATAAACATTG
CCCTTAAAGAATTGGAAGAGGGTCGCATAGTCATCAGAAACGAAGAAATGTTGAAAATCCTCGTCCCAAAGGTAAAATGA

Upstream 100 bases:

>100_bases
GTAAAACAACTTGAAGCAGTAATAATAGCAGAACAACTGAGAGTTGATAGAATAAAAGATCATATGGGACTACAGGACTT
CTTTAAGGAGAGTGATAACG

Downstream 100 bases:

>100_bases
TGGAAAGCAGATTTCTGAAAGGTAAGAACATACTTTTAGGTATAAGCAGCGGCATAGCAATCTACAAAGCTGTTGATCTT
GTAAGTAAACTGAGAAAATT

Product: DNA-directed RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSVIINYDKLLKRIRHKYAIPIAAARRAEGLKDFGRPKLDPQMVKQAGDKINIALKELEEGRIVIRNEEMLKILVPKVK

Sequences:

>Translated_79_residues
MSVIINYDKLLKRIRHKYAIPIAAARRAEGLKDFGRPKLDPQMVKQAGDKINIALKELEEGRIVIRNEEMLKILVPKVK
>Mature_78_residues
SVIINYDKLLKRIRHKYAIPIAAARRAEGLKDFGRPKLDPQMVKQAGDKINIALKELEEGRIVIRNEEMLKILVPKVK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_KOSOT (C5CGE8)

Other databases:

- EMBL:   CP001634
- RefSeq:   YP_002941533.1
- GeneID:   7967769
- GenomeReviews:   CP001634_GR
- KEGG:   kol:Kole_1847
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9093; Mature: 8962

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIINYDKLLKRIRHKYAIPIAAARRAEGLKDFGRPKLDPQMVKQAGDKINIALKELEE
CEEEECHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCCCCHHHHHHCCCEEEHHHEECCC
GRIVIRNEEMLKILVPKVK
CEEEEECCCEEHHCCCCCC
>Mature Secondary Structure 
SVIINYDKLLKRIRHKYAIPIAAARRAEGLKDFGRPKLDPQMVKQAGDKINIALKELEE
EEEECHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCCCCHHHHHHCCCEEEHHHEECCC
GRIVIRNEEMLKILVPKVK
CEEEEECCCEEHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA