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The map label for this gene is yvrC [H]

Identifier: 239617974

GI number: 239617974

Start: 1718139

End: 1719032

Strand: Reverse

Name: yvrC [H]

Synonym: Kole_1602

Alternate gene names: 239617974

Gene position: 1719032-1718139 (Counterclockwise)

Preceding gene: 239617975

Following gene: 239617973

Centisome position: 74.67

GC content: 44.07

Gene sequence:

>894_bases
GTGAAAAAGGTTTTGTTTTCACTCTTTTTTGTTACTATTCTCGCTGCTATGGGACTGTCCCTGGTCATCGTTGATGATCT
TGGCAGAATGGTGGAGATATCTAAGGCACCATCAAGAGTTATAGTTGCCGCTCCAGCTGTTACAGGCTTCTTGAAAACCC
TGGGATTGGAAGACAAAATAGTTGGCGTTACCGATTGGGATCCTTACGCATTTGAAAGCAACGTTGAGAAGATCGGAAAC
CTGGTGCCTTTAAATCTGGAAAAGATACTCCTTTTAGAACCTGACATCGTATTTCTTACGGGCGGCTTTCAGGAACCGGA
AGTGAAAAAACTCGAGAATATAGAGGTTACCGCTGTTGTGATAAACGCAAATTCCATTGAAGATATCTACCGCGATATCG
TTCTCATAGCCTCAATATTCGGGATAAACGATAAGGGAAGAAACATTGCTGCTGATTTCAGAAACAGGGTACTTCAGATA
GCCAAGAAAACCTATTCCGTTCCTCAGGAGGAAAGGCCAAAGGTTTTTCTCGCCATGATCTCCTCGGAAATCAACGAAAT
CTGGACCTGTGGAACGGGTTCTTATTTGAACCAGATAATTGCTTACGCCGGCGGTGTCAACGTTGCCGCTCCATACACCG
GAAATAACGGCTGGTTCCCGGTCAGTCCGGAATTCGTTCTCAAAACATCTCCGGATGTAATACTCGTTCCGTATTATTAC
GAAGGAGGTCAGCAAGAAGCCGTAAACAAAATCCTGAATTATAAACCTTTCGCTTCGGTTCCGGCTGTTAAAAATAAGAG
AGTCTATCCCATAGACGGGAACCTCATGTCTTACGCAAATCCAGATATCATAATCCTGCTGGAGCGACTGTACCAGCTTT
TCTACGGTGAATAA

Upstream 100 bases:

>100_bases
GGATGATCCACGAGCCAGGAGACCTCCCCGACGTTTAAGGTTCGCCATCCCTTCGAGGCTAAAGGGATGGTGAAAATTCG
TTCCTATGGAGGTGTTTTTC

Downstream 100 bases:

>100_bases
ATGTGAAACGATTCGTTTTATTCCTTTTGATTCTTTTTAGCTCTTTATTTCTAATAATATGGCTCTCCAGCCTTGGTACC
GTCAGGTACTCATTGTTTGA

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKKVLFSLFFVTILAAMGLSLVIVDDLGRMVEISKAPSRVIVAAPAVTGFLKTLGLEDKIVGVTDWDPYAFESNVEKIGN
LVPLNLEKILLLEPDIVFLTGGFQEPEVKKLENIEVTAVVINANSIEDIYRDIVLIASIFGINDKGRNIAADFRNRVLQI
AKKTYSVPQEERPKVFLAMISSEINEIWTCGTGSYLNQIIAYAGGVNVAAPYTGNNGWFPVSPEFVLKTSPDVILVPYYY
EGGQQEAVNKILNYKPFASVPAVKNKRVYPIDGNLMSYANPDIIILLERLYQLFYGE

Sequences:

>Translated_297_residues
MKKVLFSLFFVTILAAMGLSLVIVDDLGRMVEISKAPSRVIVAAPAVTGFLKTLGLEDKIVGVTDWDPYAFESNVEKIGN
LVPLNLEKILLLEPDIVFLTGGFQEPEVKKLENIEVTAVVINANSIEDIYRDIVLIASIFGINDKGRNIAADFRNRVLQI
AKKTYSVPQEERPKVFLAMISSEINEIWTCGTGSYLNQIIAYAGGVNVAAPYTGNNGWFPVSPEFVLKTSPDVILVPYYY
EGGQQEAVNKILNYKPFASVPAVKNKRVYPIDGNLMSYANPDIIILLERLYQLFYGE
>Mature_297_residues
MKKVLFSLFFVTILAAMGLSLVIVDDLGRMVEISKAPSRVIVAAPAVTGFLKTLGLEDKIVGVTDWDPYAFESNVEKIGN
LVPLNLEKILLLEPDIVFLTGGFQEPEVKKLENIEVTAVVINANSIEDIYRDIVLIASIFGINDKGRNIAADFRNRVLQI
AKKTYSVPQEERPKVFLAMISSEINEIWTCGTGSYLNQIIAYAGGVNVAAPYTGNNGWFPVSPEFVLKTSPDVILVPYYY
EGGQQEAVNKILNYKPFASVPAVKNKRVYPIDGNLMSYANPDIIILLERLYQLFYGE

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=258, Percent_Identity=27.5193798449612, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 32948; Mature: 32948

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLFSLFFVTILAAMGLSLVIVDDLGRMVEISKAPSRVIVAAPAVTGFLKTLGLEDKI
CHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCEEEEECHHHHHHHHHCCCCCCE
VGVTDWDPYAFESNVEKIGNLVPLNLEKILLLEPDIVFLTGGFQEPEVKKLENIEVTAVV
EEECCCCCCCHHCCHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHCCEEEEEEE
INANSIEDIYRDIVLIASIFGINDKGRNIAADFRNRVLQIAKKTYSVPQEERPKVFLAMI
EECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH
SSEINEIWTCGTGSYLNQIIAYAGGVNVAAPYTGNNGWFPVSPEFVLKTSPDVILVPYYY
HHHHHHEEECCCHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCEEEECCCCEEEEEEEE
EGGQQEAVNKILNYKPFASVPAVKNKRVYPIDGNLMSYANPDIIILLERLYQLFYGE
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCEEHHHHHHHHHHCCC
>Mature Secondary Structure
MKKVLFSLFFVTILAAMGLSLVIVDDLGRMVEISKAPSRVIVAAPAVTGFLKTLGLEDKI
CHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCEEEEECHHHHHHHHHCCCCCCE
VGVTDWDPYAFESNVEKIGNLVPLNLEKILLLEPDIVFLTGGFQEPEVKKLENIEVTAVV
EEECCCCCCCHHCCHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHCCEEEEEEE
INANSIEDIYRDIVLIASIFGINDKGRNIAADFRNRVLQIAKKTYSVPQEERPKVFLAMI
EECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH
SSEINEIWTCGTGSYLNQIIAYAGGVNVAAPYTGNNGWFPVSPEFVLKTSPDVILVPYYY
HHHHHHEEECCCHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCEEEECCCCEEEEEEEE
EGGQQEAVNKILNYKPFASVPAVKNKRVYPIDGNLMSYANPDIIILLERLYQLFYGE
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]