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The map label for this gene is yvoA [H]

Identifier: 239617268

GI number: 239617268

Start: 923591

End: 924334

Strand: Reverse

Name: yvoA [H]

Synonym: Kole_0877

Alternate gene names: 239617268

Gene position: 924334-923591 (Counterclockwise)

Preceding gene: 239617269

Following gene: 239617267

Centisome position: 40.15

GC content: 37.37

Gene sequence:

>744_bases
TTGGAATCTGTTGATAGAAGTAGCCCGATTCCCCTCTATTACCAGATAAAGTTGAACTTAAAAAGGTTTATCGAAGATAA
CAAGCTGAAACCAAACGATCCTCTGCCTCCAGAAGAGGAATTGGCAAAGTATTACAAGGTAAGCAGACTAACCGTTAGAC
AAGCGATGCAAGAACTGGTAAAAGAGGGCTTAATATATAGAATACAGGGTAAAGGAACATATGTAGCAGAAAACAAGATG
ATTTCTGACCTTTCCCATCTTACTGGCTTTAGTGAGGAAATGGAAAAAATTAGAAAAAAAGCCTGGTCGAAAGTTCTTAC
AAATAAACTCGTTAAACCTCCTGAAAAAGTTGCAGATGCTTTCCATATTTCTGGTGAAGCAAAGGTGCTGCTCTTATCCA
GGTTGAGATATGAAGGTGACCGCCCAAGATCAATCGAGAACGCATATTTGAATATTTCAAAATATCCCATACTCAGAAAA
ATTTCACAGTACGATATGTCAACCAAATCACTCTATAAGCTTCTAAAAGACGAGTTTTCGATTTATCCGACTTTTGCTGA
AGAGGAAATTGAAGTAGTTCATGCCGAAAAAAGCGTAGCAAAGATCCTTGGAATAAAAGAAGGGGATTGTGTTTTATCGA
TTGTTCGTATCACTTTTTCACAGGAGAAAATTCCCATTGAATATGTTTACTCGAATTACAGAAAGGACAATTTTAAACTC
AGGGTCACTTTGAAAGCCAGGTGA

Upstream 100 bases:

>100_bases
GGCAATAACGCTGATTAAACAGAATTTGACTTCGATGGAAGTTTTTTTATAAAATGAAGTTGTATATATAACTAGACATC
ATAACAAGGAGATGAAGGTT

Downstream 100 bases:

>100_bases
ATTTGATGTTTTCTGAAAGTTTTAAGATGCTCCTGCTTGGAACATTAACACTCTCTCAATTTGTAAGTATGATGTCCATT
GAACAGAAAGTTGGACAGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MESVDRSSPIPLYYQIKLNLKRFIEDNKLKPNDPLPPEEELAKYYKVSRLTVRQAMQELVKEGLIYRIQGKGTYVAENKM
ISDLSHLTGFSEEMEKIRKKAWSKVLTNKLVKPPEKVADAFHISGEAKVLLLSRLRYEGDRPRSIENAYLNISKYPILRK
ISQYDMSTKSLYKLLKDEFSIYPTFAEEEIEVVHAEKSVAKILGIKEGDCVLSIVRITFSQEKIPIEYVYSNYRKDNFKL
RVTLKAR

Sequences:

>Translated_247_residues
MESVDRSSPIPLYYQIKLNLKRFIEDNKLKPNDPLPPEEELAKYYKVSRLTVRQAMQELVKEGLIYRIQGKGTYVAENKM
ISDLSHLTGFSEEMEKIRKKAWSKVLTNKLVKPPEKVADAFHISGEAKVLLLSRLRYEGDRPRSIENAYLNISKYPILRK
ISQYDMSTKSLYKLLKDEFSIYPTFAEEEIEVVHAEKSVAKILGIKEGDCVLSIVRITFSQEKIPIEYVYSNYRKDNFKL
RVTLKAR
>Mature_247_residues
MESVDRSSPIPLYYQIKLNLKRFIEDNKLKPNDPLPPEEELAKYYKVSRLTVRQAMQELVKEGLIYRIQGKGTYVAENKM
ISDLSHLTGFSEEMEKIRKKAWSKVLTNKLVKPPEKVADAFHISGEAKVLLLSRLRYEGDRPRSIENAYLNISKYPILRK
ISQYDMSTKSLYKLLKDEFSIYPTFAEEEIEVVHAEKSVAKILGIKEGDCVLSIVRITFSQEKIPIEYVYSNYRKDNFKL
RVTLKAR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=230, Percent_Identity=26.9565217391304, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082252, Length=227, Percent_Identity=28.1938325991189, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1788418, Length=226, Percent_Identity=29.2035398230088, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790118, Length=190, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28775; Mature: 28775

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESVDRSSPIPLYYQIKLNLKRFIEDNKLKPNDPLPPEEELAKYYKVSRLTVRQAMQELV
CCCCCCCCCCCEEEEEEECHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KEGLIYRIQGKGTYVAENKMISDLSHLTGFSEEMEKIRKKAWSKVLTNKLVKPPEKVADA
HCCCEEEEECCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FHISGEAKVLLLSRLRYEGDRPRSIENAYLNISKYPILRKISQYDMSTKSLYKLLKDEFS
HCCCCCCHHHHHHHHHCCCCCCCCHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHC
IYPTFAEEEIEVVHAEKSVAKILGIKEGDCVLSIVRITFSQEKIPIEYVYSNYRKDNFKL
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHEEHHHHHHCCCCCCHHHHHHCCCCCCEEE
RVTLKAR
EEEEECC
>Mature Secondary Structure
MESVDRSSPIPLYYQIKLNLKRFIEDNKLKPNDPLPPEEELAKYYKVSRLTVRQAMQELV
CCCCCCCCCCCEEEEEEECHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KEGLIYRIQGKGTYVAENKMISDLSHLTGFSEEMEKIRKKAWSKVLTNKLVKPPEKVADA
HCCCEEEEECCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FHISGEAKVLLLSRLRYEGDRPRSIENAYLNISKYPILRKISQYDMSTKSLYKLLKDEFS
HCCCCCCHHHHHHHHHCCCCCCCCHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHC
IYPTFAEEEIEVVHAEKSVAKILGIKEGDCVLSIVRITFSQEKIPIEYVYSNYRKDNFKL
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHEEHHHHHHCCCCCCHHHHHHCCCCCCEEE
RVTLKAR
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]