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The map label for this gene is ybbD [H]

Identifier: 239617267

GI number: 239617267

Start: 921999

End: 923585

Strand: Reverse

Name: ybbD [H]

Synonym: Kole_0876

Alternate gene names: 239617267

Gene position: 923585-921999 (Counterclockwise)

Preceding gene: 239617268

Following gene: 239617266

Centisome position: 40.12

GC content: 39.07

Gene sequence:

>1587_bases
ATGTTTTCTGAAAGTTTTAAGATGCTCCTGCTTGGAACATTAACACTCTCTCAATTTGTAAGTATGATGTCCATTGAACA
GAAAGTTGGACAGCTTTTCCTCTTTGGATTTCAGGGAATCTCTTACAATGACCAGATCCAGTTGTTGATAGATAAGGGAG
TTAGAGGTTTTGTCATTTTTGGACGAAACGTTAAAGATAAAGATCAGGTAAAAGAACTTGTTGAACAGATCAAAACACAC
TGTGATGATATCCCGCCTTTCGTTGCCGTTGACCAGGAAGGCGGTATGGTCGCCAGAATCAGGGATATCTTTGTACCTCC
AAATGCTATGCTGTTGGGCTCTGTAAACGACACGGAATTAACCTATAAAGTAGGTTATCTAACGGGAAAAGCGTTGAGAG
ATCTGGGAATCAATATGGACTTCGCACCGGTACTTGATGTTAATTCAAATCCCTTTAACCCAATCATAGGAGTGCGATCG
TTCTGGAACGAGCCAACAAGGGTAGCTACGAATGGAGTTGCTTTCTTTAAAGGTCTTCTTTCTGCCGGGGTTATTCCAGT
TGGAAAGCATTTTCCTGGGCATGGAGATACGGATACAGATTCCCATACTTCACTTCCAGTTATCAATAAGCCTGAAAGCA
ACTTTATCGAAACTGATGTGTCCCCTTTCAAAATCGCTGTAGAAAATAAGATACCGGCATTGATGACTGCTCATATATTA
TTGCCTTTTTGGGACAACGTTCCAGCCACAATATCTAAGAAAATAATCTCCTATTTGAGAGAAAAGTTAGGTTTTGATGG
AGTAATCATCAGCGATGACATGCTTATGAAAGCAGTCTCGGAAGGTAAATCCGTGAAAGAAGCGGTGAAACAATCACTGT
TAGCCGGTGTTGATATGTTCATCATCTGGAAAGACTTAGAAACTCAGCTGGAAGTAGCGGATTACATCCTCCAGGAAGTA
AAAAACGGAAATATCCCTGAGGAAGTTATAGATAATGCGGTTAAAAGAATCACGAAACTTCGTCTGTTAGCGTACGCTTC
CGAACTTAATGAACTCGATCTACAAGTAGAAAAGATCTGGGAAGAAATTTCTGATGGAATAGCACTGTGCAAGGGTAATT
TTTCCCTGGAAAAGGACAAAAAGTATCTCATCTTCTTCCCCTATAACCCGGGTGTATCGATTGTTCAAGAGCGTGCTTAT
ACCAGGGAATACATAACGTCTTTACTGAAGAAAGAAGGAATAACTTTCAAACTGGTTAAATACAATCTACGCTCAACCCC
ATACAGATATATAAAAACCATAAAAAAAGCAAGTACTTATGATGGGGTAATAATATTCACGATGGATACCTACAGAAACA
AGTATTCCGCTGAACTCGTAAATCTGTTGATTCACGAAAACAAGAATAACCTCTTGATTGCGATTCAATCTCCTTACGAT
TATCTTTTTGTCAAAGACAAAGAGTTGGTTAATGCGTATATAACAACATATGATTGGAATGAATATCTCGCTATTAGATT
GTTAGATTATTTGATTGACAACACCCCACTTAAAGGCGAGTGCATTTTAACAAAGGGAGGGATTTAG

Upstream 100 bases:

>100_bases
TCACTTTTTCACAGGAGAAAATTCCCATTGAATATGTTTACTCGAATTACAGAAAGGACAATTTTAAACTCAGGGTCACT
TTGAAAGCCAGGTGAATTTG

Downstream 100 bases:

>100_bases
TCATGAGGCGTGTTTTGCTGGTAACCGTATTGCTTATCAGCTTGCTTGCGGTTGTTGCCGAAGGTAAAGTTGTACTCAAA
TTCTGGAATTTCTGGTCTGA

Product: glycoside hydrolase family 3 domain protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MFSESFKMLLLGTLTLSQFVSMMSIEQKVGQLFLFGFQGISYNDQIQLLIDKGVRGFVIFGRNVKDKDQVKELVEQIKTH
CDDIPPFVAVDQEGGMVARIRDIFVPPNAMLLGSVNDTELTYKVGYLTGKALRDLGINMDFAPVLDVNSNPFNPIIGVRS
FWNEPTRVATNGVAFFKGLLSAGVIPVGKHFPGHGDTDTDSHTSLPVINKPESNFIETDVSPFKIAVENKIPALMTAHIL
LPFWDNVPATISKKIISYLREKLGFDGVIISDDMLMKAVSEGKSVKEAVKQSLLAGVDMFIIWKDLETQLEVADYILQEV
KNGNIPEEVIDNAVKRITKLRLLAYASELNELDLQVEKIWEEISDGIALCKGNFSLEKDKKYLIFFPYNPGVSIVQERAY
TREYITSLLKKEGITFKLVKYNLRSTPYRYIKTIKKASTYDGVIIFTMDTYRNKYSAELVNLLIHENKNNLLIAIQSPYD
YLFVKDKELVNAYITTYDWNEYLAIRLLDYLIDNTPLKGECILTKGGI

Sequences:

>Translated_528_residues
MFSESFKMLLLGTLTLSQFVSMMSIEQKVGQLFLFGFQGISYNDQIQLLIDKGVRGFVIFGRNVKDKDQVKELVEQIKTH
CDDIPPFVAVDQEGGMVARIRDIFVPPNAMLLGSVNDTELTYKVGYLTGKALRDLGINMDFAPVLDVNSNPFNPIIGVRS
FWNEPTRVATNGVAFFKGLLSAGVIPVGKHFPGHGDTDTDSHTSLPVINKPESNFIETDVSPFKIAVENKIPALMTAHIL
LPFWDNVPATISKKIISYLREKLGFDGVIISDDMLMKAVSEGKSVKEAVKQSLLAGVDMFIIWKDLETQLEVADYILQEV
KNGNIPEEVIDNAVKRITKLRLLAYASELNELDLQVEKIWEEISDGIALCKGNFSLEKDKKYLIFFPYNPGVSIVQERAY
TREYITSLLKKEGITFKLVKYNLRSTPYRYIKTIKKASTYDGVIIFTMDTYRNKYSAELVNLLIHENKNNLLIAIQSPYD
YLFVKDKELVNAYITTYDWNEYLAIRLLDYLIDNTPLKGECILTKGGI
>Mature_528_residues
MFSESFKMLLLGTLTLSQFVSMMSIEQKVGQLFLFGFQGISYNDQIQLLIDKGVRGFVIFGRNVKDKDQVKELVEQIKTH
CDDIPPFVAVDQEGGMVARIRDIFVPPNAMLLGSVNDTELTYKVGYLTGKALRDLGINMDFAPVLDVNSNPFNPIIGVRS
FWNEPTRVATNGVAFFKGLLSAGVIPVGKHFPGHGDTDTDSHTSLPVINKPESNFIETDVSPFKIAVENKIPALMTAHIL
LPFWDNVPATISKKIISYLREKLGFDGVIISDDMLMKAVSEGKSVKEAVKQSLLAGVDMFIIWKDLETQLEVADYILQEV
KNGNIPEEVIDNAVKRITKLRLLAYASELNELDLQVEKIWEEISDGIALCKGNFSLEKDKKYLIFFPYNPGVSIVQERAY
TREYITSLLKKEGITFKLVKYNLRSTPYRYIKTIKKASTYDGVIIFTMDTYRNKYSAELVNLLIHENKNNLLIAIQSPYD
YLFVKDKELVNAYITTYDWNEYLAIRLLDYLIDNTPLKGECILTKGGI

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=339, Percent_Identity=32.4483775811209, Blast_Score=155, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 59676; Mature: 59676

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSESFKMLLLGTLTLSQFVSMMSIEQKVGQLFLFGFQGISYNDQIQLLIDKGVRGFVIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEECCCCEEEEE
GRNVKDKDQVKELVEQIKTHCDDIPPFVAVDQEGGMVARIRDIFVPPNAMLLGSVNDTEL
CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCCEEEECCCCCEE
TYKVGYLTGKALRDLGINMDFAPVLDVNSNPFNPIIGVRSFWNEPTRVATNGVAFFKGLL
EEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHHCCHHHHHHHHH
SAGVIPVGKHFPGHGDTDTDSHTSLPVINKPESNFIETDVSPFKIAVENKIPALMTAHIL
HCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCEEEEECCCCCHHHHHHHH
LPFWDNVPATISKKIISYLREKLGFDGVIISDDMLMKAVSEGKSVKEAVKQSLLAGVDMF
EECCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCHHHHHHHHHHHHCCCEEE
IIWKDLETQLEVADYILQEVKNGNIPEEVIDNAVKRITKLRLLAYASELNELDLQVEKIW
EEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEISDGIALCKGNFSLEKDKKYLIFFPYNPGVSIVQERAYTREYITSLLKKEGITFKLVK
HHHCCCEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
YNLRSTPYRYIKTIKKASTYDGVIIFTMDTYRNKYSAELVNLLIHENKNNLLIAIQSPYD
ECCCCCCHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCC
YLFVKDKELVNAYITTYDWNEYLAIRLLDYLIDNTPLKGECILTKGGI
EEEEECHHHHEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
>Mature Secondary Structure
MFSESFKMLLLGTLTLSQFVSMMSIEQKVGQLFLFGFQGISYNDQIQLLIDKGVRGFVIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEECCCCEEEEE
GRNVKDKDQVKELVEQIKTHCDDIPPFVAVDQEGGMVARIRDIFVPPNAMLLGSVNDTEL
CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCCEEEECCCCCEE
TYKVGYLTGKALRDLGINMDFAPVLDVNSNPFNPIIGVRSFWNEPTRVATNGVAFFKGLL
EEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHHCCHHHHHHHHH
SAGVIPVGKHFPGHGDTDTDSHTSLPVINKPESNFIETDVSPFKIAVENKIPALMTAHIL
HCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCEEEEECCCCCHHHHHHHH
LPFWDNVPATISKKIISYLREKLGFDGVIISDDMLMKAVSEGKSVKEAVKQSLLAGVDMF
EECCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCHHHHHHHHHHHHCCCEEE
IIWKDLETQLEVADYILQEVKNGNIPEEVIDNAVKRITKLRLLAYASELNELDLQVEKIW
EEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEISDGIALCKGNFSLEKDKKYLIFFPYNPGVSIVQERAYTREYITSLLKKEGITFKLVK
HHHCCCEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
YNLRSTPYRYIKTIKKASTYDGVIIFTMDTYRNKYSAELVNLLIHENKNNLLIAIQSPYD
ECCCCCCHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCC
YLFVKDKELVNAYITTYDWNEYLAIRLLDYLIDNTPLKGECILTKGGI
EEEEECHHHHEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]