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The map label for this gene is rbsD

Identifier: 239617000

GI number: 239617000

Start: 648054

End: 648452

Strand: Reverse

Name: rbsD

Synonym: Kole_0600

Alternate gene names: 239617000

Gene position: 648452-648054 (Counterclockwise)

Preceding gene: 239617001

Following gene: 239616999

Centisome position: 28.17

GC content: 41.35

Gene sequence:

>399_bases
ATGAAGCGCAGCGGAATTATAAACAGGGAGATTGCCAGAATAGCTGCGGAAATGGGGCATATGGACAGAATAACAGTTTG
TGACTGTGGTTTCCCAATACCTGACGGCGCTAAAGTCGTAGATTTGTCGATTATCAAAGGTTTTCCCAGGTTGATCGATG
TTCTCAAAGCGTTGCGAGAGGAACTTATTATAGAGAAAATAATTTTAGCGAAAGAAATCGTGGATAAAAACCCGGAAATG
CACAATGCTATATTAAAGCTTTTTTCGGACGCGGCAGTTGATTACGTTGAACATTCGGAGTTTAAGAAAATCGCTGCTGT
GAGTTCGAAAGCGTATATTAGAACGGGAGAAGCTACTCCATATTCCAACGTTATATTGTCTTCAGGCGTGGACTTTTAG

Upstream 100 bases:

>100_bases
GTGCCGCTGCTGCAATTTCAGTTACACGTATGGGGGCGCAACCGTCTTGCCCAACACTTGAAGAGGTCAAGTTCTTTCTT
GATGAACGCGGGGTGAAGAT

Downstream 100 bases:

>100_bases
ATACACATAAATCATATCTTCAAAATTTGAGCAACTTCCCCAAGGTTCGGACGAACCTTTCTTTTTGCTTTCTTTAATCC
TCATTTTAAAGCTTATGATT

Product: RbsD or FucU transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKRSGIINREIARIAAEMGHMDRITVCDCGFPIPDGAKVVDLSIIKGFPRLIDVLKALREELIIEKIILAKEIVDKNPEM
HNAILKLFSDAAVDYVEHSEFKKIAAVSSKAYIRTGEATPYSNVILSSGVDF

Sequences:

>Translated_132_residues
MKRSGIINREIARIAAEMGHMDRITVCDCGFPIPDGAKVVDLSIIKGFPRLIDVLKALREELIIEKIILAKEIVDKNPEM
HNAILKLFSDAAVDYVEHSEFKKIAAVSSKAYIRTGEATPYSNVILSSGVDF
>Mature_132_residues
MKRSGIINREIARIAAEMGHMDRITVCDCGFPIPDGAKVVDLSIIKGFPRLIDVLKALREELIIEKIILAKEIVDKNPEM
HNAILKLFSDAAVDYVEHSEFKKIAAVSSKAYIRTGEATPYSNVILSSGVDF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=140, Percent_Identity=34.2857142857143, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_KOSOT (C5CEY9)

Other databases:

- EMBL:   CP001634
- RefSeq:   YP_002940322.1
- ProteinModelPortal:   C5CEY9
- GeneID:   7968794
- GenomeReviews:   CP001634_GR
- KEGG:   kol:Kole_0600
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14615; Mature: 14615

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSGIINREIARIAAEMGHMDRITVCDCGFPIPDGAKVVDLSIIKGFPRLIDVLKALRE
CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEHHHHHHCCHHHHHHHHHHHH
ELIIEKIILAKEIVDKNPEMHNAILKLFSDAAVDYVEHSEFKKIAAVSSKAYIRTGEATP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
YSNVILSSGVDF
HHHHHHCCCCCC
>Mature Secondary Structure
MKRSGIINREIARIAAEMGHMDRITVCDCGFPIPDGAKVVDLSIIKGFPRLIDVLKALRE
CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEHHHHHHCCHHHHHHHHHHHH
ELIIEKIILAKEIVDKNPEMHNAILKLFSDAAVDYVEHSEFKKIAAVSSKAYIRTGEATP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
YSNVILSSGVDF
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA