Click here to switch to the map view.

The map label for this gene is ydeD [C]

Identifier: 239616595

GI number: 239616595

Start: 209515

End: 210432

Strand: Direct

Name: ydeD [C]

Synonym: Kole_0187

Alternate gene names: 239616595

Gene position: 209515-210432 (Clockwise)

Preceding gene: 239616594

Following gene: 239616603

Centisome position: 9.1

GC content: 45.97

Gene sequence:

>918_bases
GTGAATAAAAGAGTTACCGCAACACTCCTGCTGGCAACTACTGCCATCATCTGGGGAGAATCATATCTTTTTACAAAGGT
GGCTGTAGAAAGCATGCCACCAATGACCCTTGCGCTCTTCAGGTTTATCGTGGCTGTGGCTGTTTTTATTCCAGTACAAA
TCAAAAAAGGCGTGTGCCCGAAAAGAACAACCAAGCAACGCTTCAATATCGCGATGGCCGGGTTTTTCGGGGTTACCCTT
TATTTTCTTTTCGAAAACTACGGGTTGCGCCTTACAAGCGCTTCAGACGCTTCTCTGCTGGTCTCATCTGCCCCGATTCT
AACGATGATCCTGTACGACATCCTACACAGAAAATTCGATGGTCTCGAATATTTAGGGAGTACCATTGCCTTTATAGGAA
TATCCATAGTGATTTATGGCGGGCAATTCTCTGAGGGTTCAAGCGTGCTGGGAAATTCCCTTTCATTTCTCGCAGCGCTT
TCATGGGCAGGTTATACGTACTTTTTCGATAAAGTGAAAGACTCCTCCATAGCTACGATTGTACAGCTGATGGTGTGGGG
TATAGTTTTCATCACGCCCTTCAGCATTATAGAGGTCTTCTTTTTGAAAGATCCGGTGATTTTTTCAGTAGAAGCTGTTT
CAGGAGTACTGTATCTGGGAATACTGGCATCCGCCCTTGGATACCTGATGTGGGGAAAGGGAATACATCTCTGGGGAGGA
AAAGCGGCCACCCTCTGGGTGTACACAATCCCCGTTTTCACCATCTTAGGCGACATCATATTCTTGAAACATCGCCCTTC
GCTTTTCTTCTACGTTGGCGCATTACTGGTAGGAATGGGAATGTCTATCGCTATATGGCGTCAAAGGAAACACCTTCAAG
TTCAAGAAGAAAACGCTTCCACTCAAGGCCTGCACTGA

Upstream 100 bases:

>100_bases
AACATCACCCTCCAGGTTGAACCACGATCCTTCAGAATTCTTGAGCCCATTATCGAAAGAGTCCCGGACAGGTACACACC
ATATAAGAGGGTGTAGCACT

Downstream 100 bases:

>100_bases
ACCCCCCGATACCTCTCGCTGAAACAACCCTGTGACACGGAATGACAATGGGCAGCGGGTTGCGCTTCATAATCTGTCCA
ACAGCCCTGGCAGCCCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MNKRVTATLLLATTAIIWGESYLFTKVAVESMPPMTLALFRFIVAVAVFIPVQIKKGVCPKRTTKQRFNIAMAGFFGVTL
YFLFENYGLRLTSASDASLLVSSAPILTMILYDILHRKFDGLEYLGSTIAFIGISIVIYGGQFSEGSSVLGNSLSFLAAL
SWAGYTYFFDKVKDSSIATIVQLMVWGIVFITPFSIIEVFFLKDPVIFSVEAVSGVLYLGILASALGYLMWGKGIHLWGG
KAATLWVYTIPVFTILGDIIFLKHRPSLFFYVGALLVGMGMSIAIWRQRKHLQVQEENASTQGLH

Sequences:

>Translated_305_residues
MNKRVTATLLLATTAIIWGESYLFTKVAVESMPPMTLALFRFIVAVAVFIPVQIKKGVCPKRTTKQRFNIAMAGFFGVTL
YFLFENYGLRLTSASDASLLVSSAPILTMILYDILHRKFDGLEYLGSTIAFIGISIVIYGGQFSEGSSVLGNSLSFLAAL
SWAGYTYFFDKVKDSSIATIVQLMVWGIVFITPFSIIEVFFLKDPVIFSVEAVSGVLYLGILASALGYLMWGKGIHLWGG
KAATLWVYTIPVFTILGDIIFLKHRPSLFFYVGALLVGMGMSIAIWRQRKHLQVQEENASTQGLH
>Mature_305_residues
MNKRVTATLLLATTAIIWGESYLFTKVAVESMPPMTLALFRFIVAVAVFIPVQIKKGVCPKRTTKQRFNIAMAGFFGVTL
YFLFENYGLRLTSASDASLLVSSAPILTMILYDILHRKFDGLEYLGSTIAFIGISIVIYGGQFSEGSSVLGNSLSFLAAL
SWAGYTYFFDKVKDSSIATIVQLMVWGIVFITPFSIIEVFFLKDPVIFSVEAVSGVLYLGILASALGYLMWGKGIHLWGG
KAATLWVYTIPVFTILGDIIFLKHRPSLFFYVGALLVGMGMSIAIWRQRKHLQVQEENASTQGLH

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI87081929, Length=288, Percent_Identity=23.2638888888889, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33736; Mature: 33736

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRVTATLLLATTAIIWGESYLFTKVAVESMPPMTLALFRFIVAVAVFIPVQIKKGVCP
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
KRTTKQRFNIAMAGFFGVTLYFLFENYGLRLTSASDASLLVSSAPILTMILYDILHRKFD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHCC
GLEYLGSTIAFIGISIVIYGGQFSEGSSVLGNSLSFLAALSWAGYTYFFDKVKDSSIATI
CHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHH
VQLMVWGIVFITPFSIIEVFFLKDPVIFSVEAVSGVLYLGILASALGYLMWGKGIHLWGG
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
KAATLWVYTIPVFTILGDIIFLKHRPSLFFYVGALLVGMGMSIAIWRQRKHLQVQEENAS
CEEEEEEHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCEEEEHHHHCCEEECCCCC
TQGLH
CCCCC
>Mature Secondary Structure
MNKRVTATLLLATTAIIWGESYLFTKVAVESMPPMTLALFRFIVAVAVFIPVQIKKGVCP
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
KRTTKQRFNIAMAGFFGVTLYFLFENYGLRLTSASDASLLVSSAPILTMILYDILHRKFD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHCC
GLEYLGSTIAFIGISIVIYGGQFSEGSSVLGNSLSFLAALSWAGYTYFFDKVKDSSIATI
CHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHH
VQLMVWGIVFITPFSIIEVFFLKDPVIFSVEAVSGVLYLGILASALGYLMWGKGIHLWGG
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
KAATLWVYTIPVFTILGDIIFLKHRPSLFFYVGALLVGMGMSIAIWRQRKHLQVQEENAS
CEEEEEEHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCEEEEHHHHCCEEECCCCC
TQGLH
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]