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The map label for this gene is ydfH [C]

Identifier: 238922357

GI number: 238922357

Start: 566503

End: 567165

Strand: Reverse

Name: ydfH [C]

Synonym: EUBELI_20593

Alternate gene names: 238922357

Gene position: 567165-566503 (Counterclockwise)

Preceding gene: 238922358

Following gene: 238922355

Centisome position: 90.49

GC content: 32.13

Gene sequence:

>663_bases
ATGGAAAAATCATTAAACGAAGACACATACGAAAAATTAAAATACGATATCATGAATTTCAAGCTTGTACCGGGAGATTC
AATAAGTGCACAGAAGATAGCTGTAAGGTATAATGTTTCGAGAACACCGGCAAGAGAGGCAATTGTTAATCTTGAAAAGG
AGGGACTTCTCAAAATAATACCTCAGTCAGGCACATATGTTGCAAGTATTAATTGCAGACGTTTTGAACAGGAATGGTTT
GTCAGAAAAAGTCTTGAAGTGGGTATGGTAGACCCGGTTTTTGAGCATGTCAGCAATGAGATGCTTGATAAGATGGAAGA
ATTAAACAGCCGTCTCATTAATTATGATAAATGTAACGAAAAAGTTCCAAGGATTGAAATCGATAATGCTTTTCATGAAC
TTATATATGAAAGCTCAGGAGAACAGCTTGCTGCTAATATAATTAAAATGCAGATGAGTCATTATAACAGAATACGTTTC
TTAGCAGAGCTTAATAGTTCTATTAGTGTTAAAACTAATGAGGAACATGAAATGCTTATAGATGCAATAAGGAAAAAAGA
TAAAAGAATGTATCTTCGTGTTATTAAAGGACATATTAACAGAATTTTTAATGAGATTGATAAGTTAAGAATAATTTATC
CTGATTATTTTGAAAACAATTAA

Upstream 100 bases:

>100_bases
TGAAGAGATAGCAGGAAAGGGTGCTATAAGAAATACACTTAAAAAATACCTTTAATATATATAACAAGCAGGCTCATAGT
ATAAGAAAGGCCGCAGGGTT

Downstream 100 bases:

>100_bases
AAACAACCATCTGGATACCGGAAATCAACAGGTATCCAGATGGTTGTTTTTATTTATTGAATCATTTCTCTATATTGAGA
AGGAGTCATGTTTTTGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MEKSLNEDTYEKLKYDIMNFKLVPGDSISAQKIAVRYNVSRTPAREAIVNLEKEGLLKIIPQSGTYVASINCRRFEQEWF
VRKSLEVGMVDPVFEHVSNEMLDKMEELNSRLINYDKCNEKVPRIEIDNAFHELIYESSGEQLAANIIKMQMSHYNRIRF
LAELNSSISVKTNEEHEMLIDAIRKKDKRMYLRVIKGHINRIFNEIDKLRIIYPDYFENN

Sequences:

>Translated_220_residues
MEKSLNEDTYEKLKYDIMNFKLVPGDSISAQKIAVRYNVSRTPAREAIVNLEKEGLLKIIPQSGTYVASINCRRFEQEWF
VRKSLEVGMVDPVFEHVSNEMLDKMEELNSRLINYDKCNEKVPRIEIDNAFHELIYESSGEQLAANIIKMQMSHYNRIRF
LAELNSSISVKTNEEHEMLIDAIRKKDKRMYLRVIKGHINRIFNEIDKLRIIYPDYFENN
>Mature_220_residues
MEKSLNEDTYEKLKYDIMNFKLVPGDSISAQKIAVRYNVSRTPAREAIVNLEKEGLLKIIPQSGTYVASINCRRFEQEWF
VRKSLEVGMVDPVFEHVSNEMLDKMEELNSRLINYDKCNEKVPRIEIDNAFHELIYESSGEQLAANIIKMQMSHYNRIRF
LAELNSSISVKTNEEHEMLIDAIRKKDKRMYLRVIKGHINRIFNEIDKLRIIYPDYFENN

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=216, Percent_Identity=25.9259259259259, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25957; Mature: 25957

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKSLNEDTYEKLKYDIMNFKLVPGDSISAQKIAVRYNVSRTPAREAIVNLEKEGLLKII
CCCCCCHHHHHHHHHHHHEEEECCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCEEEE
PQSGTYVASINCRRFEQEWFVRKSLEVGMVDPVFEHVSNEMLDKMEELNSRLINYDKCNE
CCCCCEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
KVPRIEIDNAFHELIYESSGEQLAANIIKMQMSHYNRIRFLAELNSSISVKTNEEHEMLI
CCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
DAIRKKDKRMYLRVIKGHINRIFNEIDKLRIIYPDYFENN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHCCCC
>Mature Secondary Structure
MEKSLNEDTYEKLKYDIMNFKLVPGDSISAQKIAVRYNVSRTPAREAIVNLEKEGLLKII
CCCCCCHHHHHHHHHHHHEEEECCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCEEEE
PQSGTYVASINCRRFEQEWFVRKSLEVGMVDPVFEHVSNEMLDKMEELNSRLINYDKCNE
CCCCCEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
KVPRIEIDNAFHELIYESSGEQLAANIIKMQMSHYNRIRFLAELNSSISVKTNEEHEMLI
CCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
DAIRKKDKRMYLRVIKGHINRIFNEIDKLRIIYPDYFENN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]