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The map label for this gene is potC [H]

Identifier: 238922325

GI number: 238922325

Start: 530321

End: 531130

Strand: Reverse

Name: potC [H]

Synonym: EUBELI_20561

Alternate gene names: 238922325

Gene position: 531130-530321 (Counterclockwise)

Preceding gene: 238922326

Following gene: 238922324

Centisome position: 84.74

GC content: 37.28

Gene sequence:

>810_bases
ATGAAGAAATTTCTGAAATATATGATTATATGCATTGTCCTTTTGTTCATGTATATTCCAATTCTTGTGCTTGCAGTATA
CAGTTTTACGGATGCCGCTAATATAGGAGCAATACATGCATTTTCAATGCATAATTATGTAACACTTTTTACGACTCCGG
AGCTTATTAATATGATAATCGGTTCTGTGCTGCTTGCTGTTGGAAGTGCTGTACTTGCAACAATACTTGGAACAACAGGT
GCTATAGGTGCATTTTATTCAAAGGGAAAAGTAAAAGGAGCAATGTCAGTTCTTAATCAGGTTCCTGTTGTCAATGCAGA
TGTAGTTACAGGTTTTTCTATCTGTATCCTTCTTGTAGTCGTATTAGGTGTCAGTAAGGATACGTATATTCCTCTTGTTG
TGGGACATGTTATACTGAGTGCACCGTTCGTATATCTGGCTGTTGTTCCTAAATTAAAACAGATGGATCCAAGTCTGTAT
GAAGCTGCACTTGACCTTGGTGCAACACCTGTGTATGCACTTTTTAAGATAATAATACCTCAGATTGCTTCCGGCATAGC
ATCAGGATTTGTTATGGCAGTTACATTATCACTGGATGATTATTTCGTTGCAACATACACTAAGCCTGCAACATTTGATA
CAATAAGTACTTATGTTGTTAATGCAACCAAGGGTTCACAGACTGATATCAAGACTGCTTTGTGGGCTTTATCTACAATA
ATATTCCTTATTGTTATTGTAGTTGAGATAGCAATTAATCTTGCACCAGCAAGAAAAGCTGTACGAGAGGAGGCCGGAGC
TGATGAATAA

Upstream 100 bases:

>100_bases
GCTCAATGATAGCACTGATACTTCTTGTTATTATATGTATTGTCACTCTGGTTTCGGGTGATAAAGAGTCAGAAAATGCT
GGAAGAGGAGGACTTGTATA

Downstream 100 bases:

>100_bases
GATTATTGGAAAGATAAATGCGTTAATACTGTCAGCTTTAATGGCAGTAAGCGGCGCAGCAGCGGTAACAGGAGTGTTTA
ATACAAACAGTCTTACAGCG

Product: spermidine/putrescine transport system permease protein

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKKFLKYMIICIVLLFMYIPILVLAVYSFTDAANIGAIHAFSMHNYVTLFTTPELINMIIGSVLLAVGSAVLATILGTTG
AIGAFYSKGKVKGAMSVLNQVPVVNADVVTGFSICILLVVVLGVSKDTYIPLVVGHVILSAPFVYLAVVPKLKQMDPSLY
EAALDLGATPVYALFKIIIPQIASGIASGFVMAVTLSLDDYFVATYTKPATFDTISTYVVNATKGSQTDIKTALWALSTI
IFLIVIVVEIAINLAPARKAVREEAGADE

Sequences:

>Translated_269_residues
MKKFLKYMIICIVLLFMYIPILVLAVYSFTDAANIGAIHAFSMHNYVTLFTTPELINMIIGSVLLAVGSAVLATILGTTG
AIGAFYSKGKVKGAMSVLNQVPVVNADVVTGFSICILLVVVLGVSKDTYIPLVVGHVILSAPFVYLAVVPKLKQMDPSLY
EAALDLGATPVYALFKIIIPQIASGIASGFVMAVTLSLDDYFVATYTKPATFDTISTYVVNATKGSQTDIKTALWALSTI
IFLIVIVVEIAINLAPARKAVREEAGADE
>Mature_269_residues
MKKFLKYMIICIVLLFMYIPILVLAVYSFTDAANIGAIHAFSMHNYVTLFTTPELINMIIGSVLLAVGSAVLATILGTTG
AIGAFYSKGKVKGAMSVLNQVPVVNADVVTGFSICILLVVVLGVSKDTYIPLVVGHVILSAPFVYLAVVPKLKQMDPSLY
EAALDLGATPVYALFKIIIPQIASGIASGFVMAVTLSLDDYFVATYTKPATFDTISTYVVNATKGSQTDIKTALWALSTI
IFLIVIVVEIAINLAPARKAVREEAGADE

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787081, Length=243, Percent_Identity=29.6296296296296, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787368, Length=229, Percent_Identity=28.3842794759825, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28692; Mature: 28692

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS00435 PEROXIDASE_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLKYMIICIVLLFMYIPILVLAVYSFTDAANIGAIHAFSMHNYVTLFTTPELINMII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCEEEEEECHHHHHHHH
GSVLLAVGSAVLATILGTTGAIGAFYSKGKVKGAMSVLNQVPVVNADVVTGFSICILLVV
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VLGVSKDTYIPLVVGHVILSAPFVYLAVVPKLKQMDPSLYEAALDLGATPVYALFKIIIP
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHH
QIASGIASGFVMAVTLSLDDYFVATYTKPATFDTISTYVVNATKGSQTDIKTALWALSTI
HHHHHHHHHHHHHEEEECCCEEEEEECCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHH
IFLIVIVVEIAINLAPARKAVREEAGADE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKFLKYMIICIVLLFMYIPILVLAVYSFTDAANIGAIHAFSMHNYVTLFTTPELINMII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCEEEEEECHHHHHHHH
GSVLLAVGSAVLATILGTTGAIGAFYSKGKVKGAMSVLNQVPVVNADVVTGFSICILLVV
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VLGVSKDTYIPLVVGHVILSAPFVYLAVVPKLKQMDPSLYEAALDLGATPVYALFKIIIP
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHH
QIASGIASGFVMAVTLSLDDYFVATYTKPATFDTISTYVVNATKGSQTDIKTALWALSTI
HHHHHHHHHHHHHEEEECCCEEEEEECCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHH
IFLIVIVVEIAINLAPARKAVREEAGADE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]