Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is yheT [H]
Identifier: 238921515
GI number: 238921515
Start: 3552221
End: 3553195
Strand: Reverse
Name: yheT [H]
Synonym: NT01EI_3667
Alternate gene names: 238921515
Gene position: 3553195-3552221 (Counterclockwise)
Preceding gene: 238921517
Following gene: 238921514
Centisome position: 93.2
GC content: 63.38
Gene sequence:
>975_bases ATGAGCGTTTCCACCTTTTCACCGCCCCGAGCCCTACGCAATCCGCACCTGCAGACGATCTTGCCGCGGCTGCTGCGACG GCGTGCCCTGTTGACACCGGTGTGGCAGCGTTTAACCCTGCCGGACGGCGATTTTATCGATCTGGCCTGGAGCGAGGCCC CGCAGCCCGCCCGTCATAAACCGCGGGTGGTTCTGTTCCATGGTCTGGAAGGCAGCGTGCATAGCCCCTATGCCCATGGC CTGCTGCATGCCTGTCGGGAGGCTGGCTGGCTGGCGGTCGTGATGCACTTTCGCGGCTGCAGCGGTGAGCCCAACTTGAC GCCGCGTTTCTACCACTCCGGTGAAACCGGGGACGCGCGCTTTTTTCTGGCGTGGCTGCGCCGCACCTTCGGTCAGGTGC CCACCGCGGCGGTCGGGTTCTCCCTGGGGGGGAATATGTTGGGCTGTTATCTGGCCGAAGAGCAAGCCCTGGCCCCGCTG GAGGCCGCAGTGATGGTGTCGGCACCGCTGATGCTGTCGGCCTGCGCGGCGCATCTGGAGCGCGGTGTGGCGCGGATTTA TCAGCGTTATCTGTTGCATGAGCTCAAGCAGAGCGCCAGGCGTAAGCTGCGACGCTATCCGGAGATGCTGGATCTCGATC CGCTGCAACTGCGGCGTATACGCAGGCTGCGCGAGTTTGACGATCAGATCACCGCCCGCCTGCACGGGTTTCGCGATGCG GATGAGTACTATCGGCGCTGTAGCGCCCTGCCGCGGTTATCGACGATCCGCCAGCCGTTGCTGATCATTCAGGCGCGCGA CGATCCTTTTATGACGTCGGCGGTGATCCCGCCGTCGGGAGCATTGCCGTCCAATATCGAATATCAGCTGACGGCGTTTG GCGGCCACGTCGGCTTTATCGGCGGAACACTGCGCCATCCCTTCCCGTGGCTGGAGCAGCGTATTCCTGCCTGGTTAGCC CCCTATTTGGAGTAA
Upstream 100 bases:
>100_bases TGCTCAACCGGCTCCGATTTTGCGCCAAGGGGGTGTTTTGACCCTAACAGTGTGTTATTGATGGTACAAGTATTCCCCGG ATGAATTTTATTCACGCAGC
Downstream 100 bases:
>100_bases AACACGTGATCATTCCCTGGCAACAGATTGCCCCAGAGACGCTGGATAGCCTGATCGAGGCCTTTGTTCTGCGCGAGGGG ACCGACTATGGTGAGCAGGA
Product: hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSVSTFSPPRALRNPHLQTILPRLLRRRALLTPVWQRLTLPDGDFIDLAWSEAPQPARHKPRVVLFHGLEGSVHSPYAHG LLHACREAGWLAVVMHFRGCSGEPNLTPRFYHSGETGDARFFLAWLRRTFGQVPTAAVGFSLGGNMLGCYLAEEQALAPL EAAVMVSAPLMLSACAAHLERGVARIYQRYLLHELKQSARRKLRRYPEMLDLDPLQLRRIRRLREFDDQITARLHGFRDA DEYYRRCSALPRLSTIRQPLLIIQARDDPFMTSAVIPPSGALPSNIEYQLTAFGGHVGFIGGTLRHPFPWLEQRIPAWLA PYLE
Sequences:
>Translated_324_residues MSVSTFSPPRALRNPHLQTILPRLLRRRALLTPVWQRLTLPDGDFIDLAWSEAPQPARHKPRVVLFHGLEGSVHSPYAHG LLHACREAGWLAVVMHFRGCSGEPNLTPRFYHSGETGDARFFLAWLRRTFGQVPTAAVGFSLGGNMLGCYLAEEQALAPL EAAVMVSAPLMLSACAAHLERGVARIYQRYLLHELKQSARRKLRRYPEMLDLDPLQLRRIRRLREFDDQITARLHGFRDA DEYYRRCSALPRLSTIRQPLLIIQARDDPFMTSAVIPPSGALPSNIEYQLTAFGGHVGFIGGTLRHPFPWLEQRIPAWLA PYLE >Mature_323_residues SVSTFSPPRALRNPHLQTILPRLLRRRALLTPVWQRLTLPDGDFIDLAWSEAPQPARHKPRVVLFHGLEGSVHSPYAHGL LHACREAGWLAVVMHFRGCSGEPNLTPRFYHSGETGDARFFLAWLRRTFGQVPTAAVGFSLGGNMLGCYLAEEQALAPLE AAVMVSAPLMLSACAAHLERGVARIYQRYLLHELKQSARRKLRRYPEMLDLDPLQLRRIRRLREFDDQITARLHGFRDAD EYYRRCSALPRLSTIRQPLLIIQARDDPFMTSAVIPPSGALPSNIEYQLTAFGGHVGFIGGTLRHPFPWLEQRIPAWLAP YLE
Specific function: Unknown
COG id: COG0429
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. AB hydrolase 4 family [H]
Homologues:
Organism=Homo sapiens, GI23397663, Length=268, Percent_Identity=32.089552238806, Blast_Score=136, Evalue=3e-32, Organism=Homo sapiens, GI194578891, Length=317, Percent_Identity=29.6529968454259, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI23397659, Length=327, Percent_Identity=25.0764525993884, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI23397661, Length=327, Percent_Identity=25.0764525993884, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI269315865, Length=305, Percent_Identity=26.8852459016393, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI1789752, Length=323, Percent_Identity=63.4674922600619, Blast_Score=431, Evalue=1e-122, Organism=Caenorhabditis elegans, GI17566110, Length=287, Percent_Identity=26.4808362369338, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI71985405, Length=286, Percent_Identity=25.5244755244755, Blast_Score=105, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6323866, Length=248, Percent_Identity=32.258064516129, Blast_Score=128, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6325162, Length=289, Percent_Identity=30.1038062283737, Blast_Score=106, Evalue=5e-24, Organism=Saccharomyces cerevisiae, GI6319655, Length=288, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=3e-22, Organism=Drosophila melanogaster, GI24652003, Length=295, Percent_Identity=31.864406779661, Blast_Score=129, Evalue=3e-30, Organism=Drosophila melanogaster, GI281398151, Length=295, Percent_Identity=31.864406779661, Blast_Score=129, Evalue=4e-30, Organism=Drosophila melanogaster, GI24581365, Length=330, Percent_Identity=25.1515151515152, Blast_Score=104, Evalue=8e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012020 - InterPro: IPR000073 - InterPro: IPR000952 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 36737; Mature: 36606
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: PS01133 UPF0017
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSTFSPPRALRNPHLQTILPRLLRRRALLTPVWQRLTLPDGDFIDLAWSEAPQPARHK CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC PRVVLFHGLEGSVHSPYAHGLLHACREAGWLAVVMHFRGCSGEPNLTPRFYHSGETGDAR CCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCHH FFLAWLRRTFGQVPTAAVGFSLGGNMLGCYLAEEQALAPLEAAVMVSAPLMLSACAAHLE HHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH RGVARIYQRYLLHELKQSARRKLRRYPEMLDLDPLQLRRIRRLREFDDQITARLHGFRDA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH DEYYRRCSALPRLSTIRQPLLIIQARDDPFMTSAVIPPSGALPSNIEYQLTAFGGHVGFI HHHHHHHHCCCHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCEEECC GGTLRHPFPWLEQRIPAWLAPYLE CCCCCCCCHHHHHHCHHHHHHCCC >Mature Secondary Structure SVSTFSPPRALRNPHLQTILPRLLRRRALLTPVWQRLTLPDGDFIDLAWSEAPQPARHK CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC PRVVLFHGLEGSVHSPYAHGLLHACREAGWLAVVMHFRGCSGEPNLTPRFYHSGETGDAR CCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCHH FFLAWLRRTFGQVPTAAVGFSLGGNMLGCYLAEEQALAPLEAAVMVSAPLMLSACAAHLE HHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH RGVARIYQRYLLHELKQSARRKLRRYPEMLDLDPLQLRRIRRLREFDDQITARLHGFRDA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH DEYYRRCSALPRLSTIRQPLLIIQARDDPFMTSAVIPPSGALPSNIEYQLTAFGGHVGFI HHHHHHHHCCCHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCEEECC GGTLRHPFPWLEQRIPAWLAPYLE CCCCCCCCHHHHHHCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]