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The map label for this gene is rimN [H]

Identifier: 238921405

GI number: 238921405

Start: 3459307

End: 3459876

Strand: Reverse

Name: rimN [H]

Synonym: NT01EI_3556

Alternate gene names: 238921405

Gene position: 3459876-3459307 (Counterclockwise)

Preceding gene: 238921406

Following gene: 238921404

Centisome position: 90.76

GC content: 62.81

Gene sequence:

>570_bases
ATGGATAAAGAACTGAGTGACTCATTGGCCGCCGCAGTGGCGGCCCTGCGCCAGCAGCGTGTTATTGCCTATCCCACGGA
GGCGGTCTTCGGCCTAGGGTGCGATCCGGACAGCGAGCCTGCGGTGCAGGCGCTATTGGGTCTTAAGCAGCGCCCATGGG
ACAAAGGGCTGATTCTTATTGCGGCTGATTATCAGCAGCTATTGCCTTATGTCTGCGACGAGGCGTTGCAGGGGGAGCGC
CGCGCTGCCGTTTTCTCCCACTGGCCTGGGCCGGTGACCTGGGTAATGCCTGCCCGGGCGGATACGCCGCGCTGGCTGAC
CGGACGCTTTAGCACGCTGGCCGTGCGAGTCAGCGCGCATCCGCAGGTTCAGCAGCTATGCCGCTCCTACGGCAAACCTT
TGGTTTCGACCAGTGCCAACCTCAGCGGGCTGCCCCCCTGCCGTACGGCCGCCGAGGTGCGTCAACAGTTTGGCTCGGCT
TTTCCAGTGCTGGATGCGCCGGTTGGCGGGCGCCAAAACCCATCAGAAATCCGCGATGCACTGAGCGGTGAACTGTTACG
TCAGGGGTAA

Upstream 100 bases:

>100_bases
AAAAGCGCAGGCGGCGTGCGTCGCTATTGCGCCAGCAAGCTGTGCGGGAAAGTGGTAGAGCCGCCTGACGGTATCCCGAC
AGATCAATAATAAAGAAGCT

Downstream 100 bases:

>100_bases
GCGATGCAGCAATTTGCCGTTTTTGGTCACCCGATAAAGCACAGCCAGTCGCCGCGTATCCATCGGCTCTTTGCTCAACA
AACCGGCATTGCGCTCAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MDKELSDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILIAADYQQLLPYVCDEALQGER
RAAVFSHWPGPVTWVMPARADTPRWLTGRFSTLAVRVSAHPQVQQLCRSYGKPLVSTSANLSGLPPCRTAAEVRQQFGSA
FPVLDAPVGGRQNPSEIRDALSGELLRQG

Sequences:

>Translated_189_residues
MDKELSDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILIAADYQQLLPYVCDEALQGER
RAAVFSHWPGPVTWVMPARADTPRWLTGRFSTLAVRVSAHPQVQQLCRSYGKPLVSTSANLSGLPPCRTAAEVRQQFGSA
FPVLDAPVGGRQNPSEIRDALSGELLRQG
>Mature_189_residues
MDKELSDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILIAADYQQLLPYVCDEALQGER
RAAVFSHWPGPVTWVMPARADTPRWLTGRFSTLAVRVSAHPQVQQLCRSYGKPLVSTSANLSGLPPCRTAAEVRQQFGSA
FPVLDAPVGGRQNPSEIRDALSGELLRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=190, Percent_Identity=68.9473684210526, Blast_Score=267, Evalue=3e-73,
Organism=Escherichia coli, GI87081864, Length=138, Percent_Identity=28.2608695652174, Blast_Score=63, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321269, Length=178, Percent_Identity=28.0898876404494, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20490; Mature: 20490

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKELSDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILI
CCCHHHHHHHHHHHHHHHCCEEECCCHHHEECCCCCCCCHHHHHHHHHHCCCCCCCEEEE
AADYQQLLPYVCDEALQGERRAAVFSHWPGPVTWVMPARADTPRWLTGRFSTLAVRVSAH
ECCHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHCCCEEEEEEECCC
PQVQQLCRSYGKPLVSTSANLSGLPPCRTAAEVRQQFGSAFPVLDAPVGGRQNPSEIRDA
HHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
LSGELLRQG
HHHHHHHCC
>Mature Secondary Structure
MDKELSDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILI
CCCHHHHHHHHHHHHHHHCCEEECCCHHHEECCCCCCCCHHHHHHHHHHCCCCCCCEEEE
AADYQQLLPYVCDEALQGERRAAVFSHWPGPVTWVMPARADTPRWLTGRFSTLAVRVSAH
ECCHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHCCCEEEEEEECCC
PQVQQLCRSYGKPLVSTSANLSGLPPCRTAAEVRQQFGSAFPVLDAPVGGRQNPSEIRDA
HHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
LSGELLRQG
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA