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The map label for this gene is yrdD [H]

Identifier: 238921406

GI number: 238921406

Start: 3459887

End: 3460447

Strand: Reverse

Name: yrdD [H]

Synonym: NT01EI_3557

Alternate gene names: 238921406

Gene position: 3460447-3459887 (Counterclockwise)

Preceding gene: 238921407

Following gene: 238921405

Centisome position: 90.77

GC content: 57.04

Gene sequence:

>561_bases
ATGACGCAAGGCCCATTATTTGGTGCCAAGAAAAGTGAGCCATGCCCCGAGTGCGGCGCCGAACTGGTGATCCGCAGCGG
TAAGCATGGCCCTTTTCTGGGCTGTTCCCGCTATCCTGCCTGCCAGTATATCCGTGCGCTGAAGTCGGCCGACGGACATA
TTGTTAAGGTGCTTGAGGGACAGCGATGTCCGCTGTGTGGCGATGTGCTGGTGCTGCGTCAGGGGCGCTACGGTATGTTT
ATCGGGTGCCACGGTTATCCTCAGTGTGAACATACTGAGGCTATCGATAAGCCGGATGAGATGCAGTTAGCGTGTCCCCA
GTGTGGCAAGGGTAACCTGCTGCAGCGCCGCTCGCGCTACGGTAAAATATTCTATGCCTGTGAGCGCTACCCAGACTGTC
AGTTCAGCGTGAGTTTGAAACCCGTCGCCGGTGTCTGTCCACATTGCCACTACCCGCTCTTGGTGGAAAAGAAAAGCGCA
GGCGGCGTGCGTCGCTATTGCGCCAGCAAGCTGTGCGGGAAAGTGGTAGAGCCGCCTGACGGTATCCCGACAGATCAATA
A

Upstream 100 bases:

>100_bases
GAGCACACCTACCGGCAGATGGAAGAGCTGCTTTTTGAGGTTCATGAAGGCTACCTGCATTGAGCGGGGGGCCAGTTCGT
TTATTGAAAGAAATAAGATT

Downstream 100 bases:

>100_bases
TAAAGAAGCTATGGATAAAGAACTGAGTGACTCATTGGCCGCCGCAGTGGCGGCCCTGCGCCAGCAGCGTGTTATTGCCT
ATCCCACGGAGGCGGTCTTC

Product: topoisomerase DNA-binding C4 zinc finger domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MTQGPLFGAKKSEPCPECGAELVIRSGKHGPFLGCSRYPACQYIRALKSADGHIVKVLEGQRCPLCGDVLVLRQGRYGMF
IGCHGYPQCEHTEAIDKPDEMQLACPQCGKGNLLQRRSRYGKIFYACERYPDCQFSVSLKPVAGVCPHCHYPLLVEKKSA
GGVRRYCASKLCGKVVEPPDGIPTDQ

Sequences:

>Translated_186_residues
MTQGPLFGAKKSEPCPECGAELVIRSGKHGPFLGCSRYPACQYIRALKSADGHIVKVLEGQRCPLCGDVLVLRQGRYGMF
IGCHGYPQCEHTEAIDKPDEMQLACPQCGKGNLLQRRSRYGKIFYACERYPDCQFSVSLKPVAGVCPHCHYPLLVEKKSA
GGVRRYCASKLCGKVVEPPDGIPTDQ
>Mature_185_residues
TQGPLFGAKKSEPCPECGAELVIRSGKHGPFLGCSRYPACQYIRALKSADGHIVKVLEGQRCPLCGDVLVLRQGRYGMFI
GCHGYPQCEHTEAIDKPDEMQLACPQCGKGNLLQRRSRYGKIFYACERYPDCQFSVSLKPVAGVCPHCHYPLLVEKKSAG
GVRRYCASKLCGKVVEPPDGIPTDQ

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=177, Percent_Identity=70.0564971751412, Blast_Score=265, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20422; Mature: 20291

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
8.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQGPLFGAKKSEPCPECGAELVIRSGKHGPFLGCSRYPACQYIRALKSADGHIVKVLEG
CCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECC
QRCPLCGDVLVLRQGRYGMFIGCHGYPQCEHTEAIDKPDEMQLACPQCGKGNLLQRRSRY
CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHC
GKIFYACERYPDCQFSVSLKPVAGVCPHCHYPLLVEKKSAGGVRRYCASKLCGKVVEPPD
CEEEEEECCCCCCEEEEEECCHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCC
GIPTDQ
CCCCCC
>Mature Secondary Structure 
TQGPLFGAKKSEPCPECGAELVIRSGKHGPFLGCSRYPACQYIRALKSADGHIVKVLEG
CCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECC
QRCPLCGDVLVLRQGRYGMFIGCHGYPQCEHTEAIDKPDEMQLACPQCGKGNLLQRRSRY
CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHC
GKIFYACERYPDCQFSVSLKPVAGVCPHCHYPLLVEKKSAGGVRRYCASKLCGKVVEPPD
CEEEEEECCCCCCEEEEEECCHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCC
GIPTDQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]