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The map label for this gene is ygeY [H]

Identifier: 238921387

GI number: 238921387

Start: 3429689

End: 3430906

Strand: Reverse

Name: ygeY [H]

Synonym: NT01EI_3531

Alternate gene names: 238921387

Gene position: 3430906-3429689 (Counterclockwise)

Preceding gene: 238921388

Following gene: 238921386

Centisome position: 90.0

GC content: 60.02

Gene sequence:

>1218_bases
ATGGCTAAGCAAGTTCCGTTCGATATGATTCTGGAGAAGGCGCATCAGTATAAAGATGACATGTCCCGTTTCCTGCGCGA
TATGATTGCCATCCCCAGTGAAAGCTGTGATGAAAAGCGCGTGGTGCAGCGCATTAAAGAAGAGATGGAGAAGGTGGGCT
TCGATCGGGTCGAGATCGACCCGATGGGCAACGTACTGGGCTATGTGGGCCACGGTCCGCACCTGATCGCCATGGATGCC
CATATCGACACCGTCGGCGTCGGCAATATCAAAAACTGGACCTTCGACCCTTATGAGGGGATGGAGACCGATGATCTGAT
CGGCGGACGCGGCGCGTCGGATCAGGAGGGCGGCATGGCCTCCATGGTGTATGCCGGCAAGATCATCAAGGATCTGGGGC
TGGAGGATCAATATACCCTGCTGGTGACCGGTACCGTTCAGGAAGAAGACTGTGACGGCCTGTGCTGGCAGTACATTATC
GAGCAGTCCAAGATCCGTCCGGAGTTCGTGGTCAGCACCGAGCCGACCGACTGCCAGATCTATCGCGGCCAGCGCGGGCG
CATGGAGATCCGTATCGACGTGCAGGGCGTCAGCTGCCACGGCTCCGCGCCGGAGCGCGGCGACAACGCCATCTTCAAGA
TGGGGCCGATCCTCAACGAACTGCAGGAGCTGTCGCAGGGCTTGGGGTACGACGAGTTCCTTGGCAAGGGAACCCTGACG
GTATCCGAGATCTTCTTTACCTCGCCGAGCCGCTGCGCCGTGGCCGACAGCTGTGCCGTCTCCATCGACCGCCGCCTGAC
CTGGGGCGAGACCTGGGAAGGGGCGCTGGAGGAGATCCGCGCGCTGCCGGCGGTGCAGGCGGCCAACGCCACCGTCTCCA
TGTATAACTACGATCGTCCCTCCTACACCGGGCTGGTCTATCCGACCGAGTGTTACTTCCCCACCTGGAAGGTCGAAGAG
GATCATGTCACGGTGAAAACCCTGAGCCAGGCCTACCAGGGGCTGTTCCATAAGCAGCCGGTGGTCGACAAGTGGACCTT
CTCCACCAACGGCGTTTCCATCATGGGCCGCCACGGTATTCCGGTGATCGGCTTTGGTCCGGGTAAAGAGCCGGAGGCGC
ACGCGCCGAACGAGAAGACCTGGAAGGATCATCTGGTGACCTGCGCGGCGATGTATGCCGCTATCCCGCTGACCTATCTT
GAGCAACTGAAGAAGTAA

Upstream 100 bases:

>100_bases
GGTTTGGGAAGGAAAATACCCGGCGTGTGAATAAGCGCGGGGGCATCGTTGAATTCATGTTCCCCGCCCGGCGGGGGGAT
CACCACTGGAGAAGAATATA

Downstream 100 bases:

>100_bases
TCCATACGTTATCAACCCCGGCATCGTGCATGCCGGGGTCTCTTTGCGGAGCCTCGATGATGAAAAGCCTGATCAAAAAC
GGCACGGTGGTGAATCACAA

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MAKQVPFDMILEKAHQYKDDMSRFLRDMIAIPSESCDEKRVVQRIKEEMEKVGFDRVEIDPMGNVLGYVGHGPHLIAMDA
HIDTVGVGNIKNWTFDPYEGMETDDLIGGRGASDQEGGMASMVYAGKIIKDLGLEDQYTLLVTGTVQEEDCDGLCWQYII
EQSKIRPEFVVSTEPTDCQIYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILNELQELSQGLGYDEFLGKGTLT
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALEEIRALPAVQAANATVSMYNYDRPSYTGLVYPTECYFPTWKVEE
DHVTVKTLSQAYQGLFHKQPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKDHLVTCAAMYAAIPLTYL
EQLKK

Sequences:

>Translated_405_residues
MAKQVPFDMILEKAHQYKDDMSRFLRDMIAIPSESCDEKRVVQRIKEEMEKVGFDRVEIDPMGNVLGYVGHGPHLIAMDA
HIDTVGVGNIKNWTFDPYEGMETDDLIGGRGASDQEGGMASMVYAGKIIKDLGLEDQYTLLVTGTVQEEDCDGLCWQYII
EQSKIRPEFVVSTEPTDCQIYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILNELQELSQGLGYDEFLGKGTLT
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALEEIRALPAVQAANATVSMYNYDRPSYTGLVYPTECYFPTWKVEE
DHVTVKTLSQAYQGLFHKQPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKDHLVTCAAMYAAIPLTYL
EQLKK
>Mature_404_residues
AKQVPFDMILEKAHQYKDDMSRFLRDMIAIPSESCDEKRVVQRIKEEMEKVGFDRVEIDPMGNVLGYVGHGPHLIAMDAH
IDTVGVGNIKNWTFDPYEGMETDDLIGGRGASDQEGGMASMVYAGKIIKDLGLEDQYTLLVTGTVQEEDCDGLCWQYIIE
QSKIRPEFVVSTEPTDCQIYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILNELQELSQGLGYDEFLGKGTLTV
SEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALEEIRALPAVQAANATVSMYNYDRPSYTGLVYPTECYFPTWKVEED
HVTVKTLSQAYQGLFHKQPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKDHLVTCAAMYAAIPLTYLE
QLKK

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=400, Percent_Identity=90.5, Blast_Score=768, Evalue=0.0,
Organism=Escherichia coli, GI1790395, Length=382, Percent_Identity=26.9633507853403, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788816, Length=291, Percent_Identity=23.7113402061856, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR017706
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 45246; Mature: 45115

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQVPFDMILEKAHQYKDDMSRFLRDMIAIPSESCDEKRVVQRIKEEMEKVGFDRVEID
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
PMGNVLGYVGHGPHLIAMDAHIDTVGVGNIKNWTFDPYEGMETDDLIGGRGASDQEGGMA
CCCCHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
SMVYAGKIIKDLGLEDQYTLLVTGTVQEEDCDGLCWQYIIEQSKIRPEFVVSTEPTDCQI
HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEE
YRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILNELQELSQGLGYDEFLGKGTLT
EECCCCCEEEEEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHCCCCEE
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALEEIRALPAVQAANATVSMYNYDRP
EEHEEECCCCCCEECCHHHHEECCCCCCCCCHHHHHHHHHHCCCHHHCCCEEEEEECCCC
SYTGLVYPTECYFPTWKVEEDHVTVKTLSQAYQGLFHKQPVVDKWTFSTNGVSIMGRHGI
CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCC
PVIGFGPGKEPEAHAPNEKTWKDHLVTCAAMYAAIPLTYLEQLKK
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKQVPFDMILEKAHQYKDDMSRFLRDMIAIPSESCDEKRVVQRIKEEMEKVGFDRVEID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
PMGNVLGYVGHGPHLIAMDAHIDTVGVGNIKNWTFDPYEGMETDDLIGGRGASDQEGGMA
CCCCHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
SMVYAGKIIKDLGLEDQYTLLVTGTVQEEDCDGLCWQYIIEQSKIRPEFVVSTEPTDCQI
HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEE
YRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILNELQELSQGLGYDEFLGKGTLT
EECCCCCEEEEEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHCCCCEE
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALEEIRALPAVQAANATVSMYNYDRP
EEHEEECCCCCCEECCHHHHEECCCCCCCCCHHHHHHHHHHCCCHHHCCCEEEEEECCCC
SYTGLVYPTECYFPTWKVEEDHVTVKTLSQAYQGLFHKQPVVDKWTFSTNGVSIMGRHGI
CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCC
PVIGFGPGKEPEAHAPNEKTWKDHLVTCAAMYAAIPLTYLEQLKK
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]