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The map label for this gene is hyaC [H]

Identifier: 238921264

GI number: 238921264

Start: 3292445

End: 3293179

Strand: Reverse

Name: hyaC [H]

Synonym: NT01EI_3407

Alternate gene names: 238921264

Gene position: 3293179-3292445 (Counterclockwise)

Preceding gene: 238921265

Following gene: 238921263

Centisome position: 86.38

GC content: 58.5

Gene sequence:

>735_bases
ATGAGTGAAAAGACATCCCCGCACGCCGAGGAGGCGCGTGATGATGCCGTCAGCCACTATGTGTTCGAGGCGCCGGTGCG
CCTGTGGCACTGGCTGACGGTGGGCTGCATGCTGGTGCTGATGGTGACCGGGTACTTCATTGGCCGGCCACTGCCGTCGG
TCAGCGGCGAGGCCACCTATCTGTTCTACATGGGCTATATCCGTCTGGTTCATTTCAGCGCAGGGATGCTGTTCACCGTG
CTGTTGCTGATGCGCATCTATTGGGCCTGCGTCGGCAACCGCTACTCGCGCGAGCTGTTCGTGGTGCCAGCGTGGCGCCG
CAGCTGGTGGCAGGGCGTGTTGTATGAGATCCGCTGGTATCTGTTTCTGGAGAAGCGTCCGAGCGGTGACATTGGCCATA
ACCCCATCGCCCAGGCGGCGATGTTTGGCTATTTCCTGATGTCGGTATTCATGATCCTCACCGGGTTCGCGCTGTTCAGC
GAGCACAGCCAGTACGCCATCTTCGCCCCGTTCCACTATGTGATCGAGTTCTTCTACTGGACCGGCGGCAACTCCATCGA
TATCCACAGCTGGCACCGCCTGGGGATGTGGCTGATCGGGGCGTTTATCATTGGGCATGTGTATATGGCCATCCGCGAAG
ATATCATGTCTGACGACACGGTTATCTCTACCATGATCAATGGATTCCGCAGCCATAAGTTCCCGAAGCGCAAACGCGAC
AAGGAGGCGTCATGA

Upstream 100 bases:

>100_bases
CAGTTTCGACCCCTGCCTGGCCTGTTCAACCCACGTGCTCGGCGATGACGGCAGCGAATTGATCTCCGTCCAGGTACGCT
AAGCACTAAGGAGAAGAACG

Downstream 100 bases:

>100_bases
GTGAGCAGCGCGTGGTGGTGATGGGGCTGGGCAACCTGCTGTGGGCCGATGAGGGCTTCGGCGTACGGGTGGCCGAACGG
CTGTATGCCCATTACCATTG

Product: hydrogenase 1 b-type cytochrome subunit

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSEKTSPHAEEARDDAVSHYVFEAPVRLWHWLTVGCMLVLMVTGYFIGRPLPSVSGEATYLFYMGYIRLVHFSAGMLFTV
LLLMRIYWACVGNRYSRELFVVPAWRRSWWQGVLYEIRWYLFLEKRPSGDIGHNPIAQAAMFGYFLMSVFMILTGFALFS
EHSQYAIFAPFHYVIEFFYWTGGNSIDIHSWHRLGMWLIGAFIIGHVYMAIREDIMSDDTVISTMINGFRSHKFPKRKRD
KEAS

Sequences:

>Translated_244_residues
MSEKTSPHAEEARDDAVSHYVFEAPVRLWHWLTVGCMLVLMVTGYFIGRPLPSVSGEATYLFYMGYIRLVHFSAGMLFTV
LLLMRIYWACVGNRYSRELFVVPAWRRSWWQGVLYEIRWYLFLEKRPSGDIGHNPIAQAAMFGYFLMSVFMILTGFALFS
EHSQYAIFAPFHYVIEFFYWTGGNSIDIHSWHRLGMWLIGAFIIGHVYMAIREDIMSDDTVISTMINGFRSHKFPKRKRD
KEAS
>Mature_243_residues
SEKTSPHAEEARDDAVSHYVFEAPVRLWHWLTVGCMLVLMVTGYFIGRPLPSVSGEATYLFYMGYIRLVHFSAGMLFTVL
LLMRIYWACVGNRYSRELFVVPAWRRSWWQGVLYEIRWYLFLEKRPSGDIGHNPIAQAAMFGYFLMSVFMILTGFALFSE
HSQYAIFAPFHYVIEFFYWTGGNSIDIHSWHRLGMWLIGAFIIGHVYMAIREDIMSDDTVISTMINGFRSHKFPKRKRDK
EAS

Specific function: Probable b-type cytochrome [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=235, Percent_Identity=85.1063829787234, Blast_Score=422, Evalue=1e-120,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR011577
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N; PF01292 Ni_hydr_CYTB [H]

EC number: NA

Molecular weight: Translated: 28533; Mature: 28401

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS00883 NI_HGENASE_CYTB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKTSPHAEEARDDAVSHYVFEAPVRLWHWLTVGCMLVLMVTGYFIGRPLPSVSGEATY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LFYMGYIRLVHFSAGMLFTVLLLMRIYWACVGNRYSRELFVVPAWRRSWWQGVLYEIRWY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
LFLEKRPSGDIGHNPIAQAAMFGYFLMSVFMILTGFALFSEHSQYAIFAPFHYVIEFFYW
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHC
TGGNSIDIHSWHRLGMWLIGAFIIGHVYMAIREDIMSDDTVISTMINGFRSHKFPKRKRD
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
KEAS
CCCC
>Mature Secondary Structure 
SEKTSPHAEEARDDAVSHYVFEAPVRLWHWLTVGCMLVLMVTGYFIGRPLPSVSGEATY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LFYMGYIRLVHFSAGMLFTVLLLMRIYWACVGNRYSRELFVVPAWRRSWWQGVLYEIRWY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
LFLEKRPSGDIGHNPIAQAAMFGYFLMSVFMILTGFALFSEHSQYAIFAPFHYVIEFFYW
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHC
TGGNSIDIHSWHRLGMWLIGAFIIGHVYMAIREDIMSDDTVISTMINGFRSHKFPKRKRD
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
KEAS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]