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The map label for this gene is tsx [H]

Identifier: 238921206

GI number: 238921206

Start: 3231978

End: 3232850

Strand: Reverse

Name: tsx [H]

Synonym: NT01EI_3348

Alternate gene names: 238921206

Gene position: 3232850-3231978 (Counterclockwise)

Preceding gene: 238921208

Following gene: 238921205

Centisome position: 84.8

GC content: 53.72

Gene sequence:

>873_bases
ATGAAAAAAACAATTTTAGCTGCGGGCGCTCTGCTGTCCTGTCTCTCCACCAGCGTCACGGCAACGGCGGCGGACAATAA
TGGCGAGTATCTTTCCGACTGGTGGCACCAGAGCGTTAACGTGGTGGGGAGCTACCATACCCGCTTTGGGCCGTTCCGTA
ACAATGATGTATATCTGGAGTATGAAGCCTTTGCCAAGAAGGACTGGTTCGATTTTTATGGCTATGTAGATGTCCCGAAG
TTCTTCGGTACCGGCAACACGGTCGATAAAGGGATCTGGGATAAAGGCTCCCCGTTGTTTATGGAGATTGAGCCGCGTTT
CTCTATCGATAAGCTGACCGGTCTGAACCTGGGCTTTGGTCCATTCAAAGAGTGGTACTTCGCGAACGACTATGTCTTTG
ACATGGGACGTAACAGCGATAGCCGCCAGAATACGTGGTATATGGGTCTGGGGACCGACATTGATACCGGTCTGCCGATG
AGCCTGTCGCTGAACGTGTATGGCAAGTACCAGTGGGAAAACTACGGTGCGGCCAACGAAAACAGCTGGGACGGCTACCG
GGTGAAGGTGAAGTACTTCGTGCCGTTGACCGAGCTGTGGGGCGGCAATCTGAACTATATCGGCTTCACCAACTTTGATT
TCGGCTCCCGTCTGGGCGATAAATCCGGGGTCGGTAGCAACGGCAACCAGCTTCGCTCCAATAACTCTATCGCTTCCAGC
CATATTCTGGCACTGAACTACACCCATTGGCACTACTCCGTGGTGGCCCGTTACTTCCATAACGGTGGCCAGTGGAAAGC
GGGTGCTGCACTGGGCGAAGATCTGCATCCGACCGGCTGGGGCTACTACCTGGTGGTGGGGTACAACTTCTGA

Upstream 100 bases:

>100_bases
AGCGGGCGTTCGTGCGAGTGATGGCTGATTTGTGGCGATGTTGACATATTGTCGTTGTCTCCCTCTGTGTGGGGAGCTTT
TTAAGGTAAGTGGCACTCAT

Downstream 100 bases:

>100_bases
TTCCACGCCATGTCTGTATCAAGGCCCCGCTGCGACGGGGCCTTTTTCATGGATCCAAAAGAGGAAGACGTGCAGGAACA
CGAGCCGTTTTTCTGTGCCG

Product: nucleoside-specific channel-forming protein tsx

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKKTILAAGALLSCLSTSVTATAADNNGEYLSDWWHQSVNVVGSYHTRFGPFRNNDVYLEYEAFAKKDWFDFYGYVDVPK
FFGTGNTVDKGIWDKGSPLFMEIEPRFSIDKLTGLNLGFGPFKEWYFANDYVFDMGRNSDSRQNTWYMGLGTDIDTGLPM
SLSLNVYGKYQWENYGAANENSWDGYRVKVKYFVPLTELWGGNLNYIGFTNFDFGSRLGDKSGVGSNGNQLRSNNSIASS
HILALNYTHWHYSVVARYFHNGGQWKAGAALGEDLHPTGWGYYLVVGYNF

Sequences:

>Translated_290_residues
MKKTILAAGALLSCLSTSVTATAADNNGEYLSDWWHQSVNVVGSYHTRFGPFRNNDVYLEYEAFAKKDWFDFYGYVDVPK
FFGTGNTVDKGIWDKGSPLFMEIEPRFSIDKLTGLNLGFGPFKEWYFANDYVFDMGRNSDSRQNTWYMGLGTDIDTGLPM
SLSLNVYGKYQWENYGAANENSWDGYRVKVKYFVPLTELWGGNLNYIGFTNFDFGSRLGDKSGVGSNGNQLRSNNSIASS
HILALNYTHWHYSVVARYFHNGGQWKAGAALGEDLHPTGWGYYLVVGYNF
>Mature_290_residues
MKKTILAAGALLSCLSTSVTATAADNNGEYLSDWWHQSVNVVGSYHTRFGPFRNNDVYLEYEAFAKKDWFDFYGYVDVPK
FFGTGNTVDKGIWDKGSPLFMEIEPRFSIDKLTGLNLGFGPFKEWYFANDYVFDMGRNSDSRQNTWYMGLGTDIDTGLPM
SLSLNVYGKYQWENYGAANENSWDGYRVKVKYFVPLTELWGGNLNYIGFTNFDFGSRLGDKSGVGSNGNQLRSNNSIASS
HILALNYTHWHYSVVARYFHNGGQWKAGAALGEDLHPTGWGYYLVVGYNF

Specific function: Functions as substrate-specific channel for nucleosides and deoxynucleosides [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786612, Length=296, Percent_Identity=73.6486486486486, Blast_Score=422, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003055
- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 32813; Mature: 32813

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTILAAGALLSCLSTSVTATAADNNGEYLSDWWHQSVNVVGSYHTRFGPFRNNDVYLE
CCCEEHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHEEEEHHHCCCCCCCCCEEEE
YEAFAKKDWFDFYGYVDVPKFFGTGNTVDKGIWDKGSPLFMEIEPRFSIDKLTGLNLGFG
EHHHCCCCCHHHCCEEECHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCC
PFKEWYFANDYVFDMGRNSDSRQNTWYMGLGTDIDTGLPMSLSLNVYGKYQWENYGAANE
CCHHHEECCCEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCC
NSWDGYRVKVKYFVPLTELWGGNLNYIGFTNFDFGSRLGDKSGVGSNGNQLRSNNSIASS
CCCCCEEEEEEEEEEEHHHCCCCCCEEEEECCCCHHHCCCCCCCCCCCCEECCCCCCCCC
HILALNYTHWHYSVVARYFHNGGQWKAGAALGEDLHPTGWGYYLVVGYNF
EEEEEEECCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKTILAAGALLSCLSTSVTATAADNNGEYLSDWWHQSVNVVGSYHTRFGPFRNNDVYLE
CCCEEHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHEEEEHHHCCCCCCCCCEEEE
YEAFAKKDWFDFYGYVDVPKFFGTGNTVDKGIWDKGSPLFMEIEPRFSIDKLTGLNLGFG
EHHHCCCCCHHHCCEEECHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCC
PFKEWYFANDYVFDMGRNSDSRQNTWYMGLGTDIDTGLPMSLSLNVYGKYQWENYGAANE
CCHHHEECCCEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCC
NSWDGYRVKVKYFVPLTELWGGNLNYIGFTNFDFGSRLGDKSGVGSNGNQLRSNNSIASS
CCCCCEEEEEEEEEEEHHHCCCCCCEEEEECCCCHHHCCCCCCCCCCCCEECCCCCCCCC
HILALNYTHWHYSVVARYFHNGGQWKAGAALGEDLHPTGWGYYLVVGYNF
EEEEEEECCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]