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The map label for this gene is exbD [H]

Identifier: 238896518

GI number: 238896518

Start: 4498298

End: 4498723

Strand: Reverse

Name: exbD [H]

Synonym: KP1_4703

Alternate gene names: 238896518

Gene position: 4498723-4498298 (Counterclockwise)

Preceding gene: 238896519

Following gene: 238896517

Centisome position: 85.71

GC content: 54.69

Gene sequence:

>426_bases
ATGGCGATGCGTCTTAATGAAAACCTGGACGATAACGGCGAAATGCATGAGATCAACGTGACGCCGTTTATCGACGTCAT
GCTGGTTCTGCTGATTATCTTTATGGTGGCCGCGCCGCTGGCGACGGTCGACGTGAAGGTCAATCTGCCGGCCTCCTCCA
GCCAGCCGCAACCGCGACCGGAAAAACCCATCTACCTGTCGGTGAAGGCGGATAAGAGCATGTTCCTCGGCAACGACCCG
GTTACCGAAGCGAATATGATTAACGCCCTGGATAGCCTGACCGCCGGCAAAAAAGATACCACCGTCTTCTTCCGCGCGGA
TAAAACCGTCGATTACGAGACGATGATGAAAGTGATGGATACCCTGCATCAGGCGGGCTATCTCAAGATCGGGCTGGTGG
GCGAAGAGACCGTCAAAGCGAAGTAA

Upstream 100 bases:

>100_bases
CGCTCAGGTACTCCTGCTGCAAAGCCGCGATCTGGACCTCAGCGCCAGCGGCGTGAAGCCGGTGCGCAGCGCGCAGAAAT
TACGGGTAGGTTGATCGGCT

Downstream 100 bases:

>100_bases
CCTCCCCCTTTCCACTTTTCTCCTCAGGCTGGCCTTGCGCCAGCTTTTTAATAGGTGACGCAATAACTTGTAAGACCAAT
CTTATAGATGTGTGACAACT

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASSSQPQPRPEKPIYLSVKADKSMFLGNDP
VTEANMINALDSLTAGKKDTTVFFRADKTVDYETMMKVMDTLHQAGYLKIGLVGEETVKAK

Sequences:

>Translated_141_residues
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASSSQPQPRPEKPIYLSVKADKSMFLGNDP
VTEANMINALDSLTAGKKDTTVFFRADKTVDYETMMKVMDTLHQAGYLKIGLVGEETVKAK
>Mature_140_residues
AMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASSSQPQPRPEKPIYLSVKADKSMFLGNDPV
TEANMINALDSLTAGKKDTTVFFRADKTVDYETMMKVMDTLHQAGYLKIGLVGEETVKAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=87.9432624113475, Blast_Score=259, Evalue=7e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15574; Mature: 15443

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASSSQPQPRP
CCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPIYLSVKADKSMFLGNDPVTEANMINALDSLTAGKKDTTVFFRADKTVDYETMMKVMD
CCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
TLHQAGYLKIGLVGEETVKAK
HHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
AMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASSSQPQPRP
CEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPIYLSVKADKSMFLGNDPVTEANMINALDSLTAGKKDTTVFFRADKTVDYETMMKVMD
CCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
TLHQAGYLKIGLVGEETVKAK
HHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]