Click here to switch to the map view.

The map label for this gene is ycfD [H]

Identifier: 238892875

GI number: 238892875

Start: 679187

End: 680308

Strand: Reverse

Name: ycfD [H]

Synonym: KP1_0694

Alternate gene names: 238892875

Gene position: 680308-679187 (Counterclockwise)

Preceding gene: 238892878

Following gene: 238892870

Centisome position: 12.96

GC content: 59.0

Gene sequence:

>1122_bases
ATGGCTTATCAACTCAACATTAACTGGCCCGAGTTTTTAGAAAAATACTGGCAGAAACAGCCGGTGGTATTAAAAAACGC
GTTTCCGGACTTCGTCGACCCGATTACTCCGGACGAGCTGGCCGGATTAGCCATGGAGCCGGAAGTCGACAGCCGGCTGG
TCAGCCTGAAAAACGGCAAATGGCAGGCCAGCAATGGTCCTTTTGAACATTTCGACGGGCTGGGCGAAACCGGTTGGTCC
CTGCTGGCCCAGGCGGTAAACCACTGGCATATGCCGGCCGCCGAGCTGGTGCGTCCGTTCCGCGTACTGCCGGACTGGCG
CCTGGACGACCTGATGATCTCCTTCTCCGTCCCCGGCGGCGGTGTCGGTCCGCATATCGATCAGTATGACGTCTTTATTA
TTCAGGGCATGGGCAGCCGCCGCTGGCGCGTGGGTGACAAGCTGCCGATGCGTCAGTTCTGTCCGCATCCGGCACTGCTG
CACGTCGATCCGTTCCCACCGATCATTGATGAAGATCTGCAGCCGGGCGACATCCTCTACATTCCACCGGGATTCCCGCA
CGACGGCATAACCCACGAAACCGCCCTGAACTACTCCGTCGGCTTCCGCGGGCCAAACGGCCGCGACCTGATCAGCAGCT
TCGCCGACTATGTGCTGGAGAACGATCTCGGCGGCGAGCACTACAGCGATCCGGACCTCACCTGCCGCGAGCATCCGGGC
CGGGTTGAAGAGTATGAACTCGAACGTCTGCGCACCATGATGATCGATATGATTCGCCAGCCGGAAGACTTCAAGCAGTG
GTTCGGCAGTTTCGTCACCACCCCGCGTCACGAGCTGGATATTGCGCCGGCGGAACCACCGTATGAAGAAGAGGAAGTGG
TCGATGCGCTGCTGGGTGGTGAAAAGCTTTCCCGCCTGAGCGGCCTGCGCGTTCTGCATATCGGCGACAGCTTCTTCGTG
CATAGCGAACAACTCGACACCACCGATGCCGAAGCGCTGGATGCGCTGTGTCGCTATACCTCATTAGGCCAGGAAGAGCT
CGGCAGCGGCCTGCAGAATCAGGCGTTCGTGAGCGAACTGACGCGGCTGATTAATCAGGGCTACTGGTACTTCGAAGAGT
AA

Upstream 100 bases:

>100_bases
CGCCGATGGTGAATTAAGCACCACTCTTGACCCACGACAATGCGCCCGCCCGGCCCTCATTTCTATAATCAGGCCCGTTT
CTTCTTACTGGTAATAATCG

Downstream 100 bases:

>100_bases
GAGAGTCGCGATACTGCGGGCAGCCGCCTGGCGCTGCCCGGTTTCTTTTATGACTCATCGTCAGTAAAGAGCTGTTCAAT
CGATTTGGTCGGATAAAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MAYQLNINWPEFLEKYWQKQPVVLKNAFPDFVDPITPDELAGLAMEPEVDSRLVSLKNGKWQASNGPFEHFDGLGETGWS
LLAQAVNHWHMPAAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGMGSRRWRVGDKLPMRQFCPHPALL
HVDPFPPIIDEDLQPGDILYIPPGFPHDGITHETALNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPG
RVEEYELERLRTMMIDMIRQPEDFKQWFGSFVTTPRHELDIAPAEPPYEEEEVVDALLGGEKLSRLSGLRVLHIGDSFFV
HSEQLDTTDAEALDALCRYTSLGQEELGSGLQNQAFVSELTRLINQGYWYFEE

Sequences:

>Translated_373_residues
MAYQLNINWPEFLEKYWQKQPVVLKNAFPDFVDPITPDELAGLAMEPEVDSRLVSLKNGKWQASNGPFEHFDGLGETGWS
LLAQAVNHWHMPAAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGMGSRRWRVGDKLPMRQFCPHPALL
HVDPFPPIIDEDLQPGDILYIPPGFPHDGITHETALNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPG
RVEEYELERLRTMMIDMIRQPEDFKQWFGSFVTTPRHELDIAPAEPPYEEEEVVDALLGGEKLSRLSGLRVLHIGDSFFV
HSEQLDTTDAEALDALCRYTSLGQEELGSGLQNQAFVSELTRLINQGYWYFEE
>Mature_372_residues
AYQLNINWPEFLEKYWQKQPVVLKNAFPDFVDPITPDELAGLAMEPEVDSRLVSLKNGKWQASNGPFEHFDGLGETGWSL
LAQAVNHWHMPAAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGMGSRRWRVGDKLPMRQFCPHPALLH
VDPFPPIIDEDLQPGDILYIPPGFPHDGITHETALNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPGR
VEEYELERLRTMMIDMIRQPEDFKQWFGSFVTTPRHELDIAPAEPPYEEEEVVDALLGGEKLSRLSGLRVLHIGDSFFVH
SEQLDTTDAEALDALCRYTSLGQEELGSGLQNQAFVSELTRLINQGYWYFEE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=372, Percent_Identity=65.3225806451613, Blast_Score=516, Evalue=1e-147,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42437; Mature: 42306

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQLNINWPEFLEKYWQKQPVVLKNAFPDFVDPITPDELAGLAMEPEVDSRLVSLKNGK
CEEEEECCHHHHHHHHHCCCCEEHHHCCCHHHCCCCHHHHCCCCCCCCHHHHHEEECCCE
WQASNGPFEHFDGLGETGWSLLAQAVNHWHMPAAELVRPFRVLPDWRLDDLMISFSVPGG
EECCCCCHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
GVGPHIDQYDVFIIQGMGSRRWRVGDKLPMRQFCPHPALLHVDPFPPIIDEDLQPGDILY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCEEE
IPPGFPHDGITHETALNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPG
ECCCCCCCCCCCHHEECEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
RVEEYELERLRTMMIDMIRQPEDFKQWFGSFVTTPRHELDIAPAEPPYEEEEVVDALLGG
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEECCCCCCCCCHHHHHHHHHCH
EKLSRLSGLRVLHIGDSFFVHSEQLDTTDAEALDALCRYTSLGQEELGSGLQNQAFVSEL
HHHHHHCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHH
TRLINQGYWYFEE
HHHHHCCCEEECC
>Mature Secondary Structure 
AYQLNINWPEFLEKYWQKQPVVLKNAFPDFVDPITPDELAGLAMEPEVDSRLVSLKNGK
EEEEECCHHHHHHHHHCCCCEEHHHCCCHHHCCCCHHHHCCCCCCCCHHHHHEEECCCE
WQASNGPFEHFDGLGETGWSLLAQAVNHWHMPAAELVRPFRVLPDWRLDDLMISFSVPGG
EECCCCCHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
GVGPHIDQYDVFIIQGMGSRRWRVGDKLPMRQFCPHPALLHVDPFPPIIDEDLQPGDILY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCEEE
IPPGFPHDGITHETALNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPG
ECCCCCCCCCCCHHEECEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
RVEEYELERLRTMMIDMIRQPEDFKQWFGSFVTTPRHELDIAPAEPPYEEEEVVDALLGG
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEECCCCCCCCCHHHHHHHHHCH
EKLSRLSGLRVLHIGDSFFVHSEQLDTTDAEALDALCRYTSLGQEELGSGLQNQAFVSEL
HHHHHHCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHH
TRLINQGYWYFEE
HHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]