| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
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The map label for this gene is lpfC [H]
Identifier: 238892793
GI number: 238892793
Start: 590004
End: 592493
Strand: Direct
Name: lpfC [H]
Synonym: KP1_0600
Alternate gene names: 238892793
Gene position: 590004-592493 (Clockwise)
Preceding gene: 238892792
Following gene: 238892794
Centisome position: 11.24
GC content: 61.85
Gene sequence:
>2490_bases GTGATGAACAACCCTGAACGGCGCACCATGATGATCCTGCTGGCGCTGCTGCTGGTGATGATCCTCCTGCTGGCATATTT CCGCAACGCAGAGGCCCGCGAGACTTTTAACTCCCATGCGCTGGAAATCGACAATCCCGGCCAGCCGGTGGCGGATTTAT CCACCTTTGCCGAAGCGGACGGCCAGTTGCCGGGCGTTTACCGGGTGACGGTGTATGTGAACGGCGAACAGCAGGGCGAA GCGCAGGATATCGCCTTCACCGCCGGGCCAGACAAAAAACTCCGCGCGCAGATAACCCCCGCCATGCTGAAAGCGTGGGG CGTAAAAACCGATGCTTTTCCCGCGCTGGCGGCGTTGCCTCCGGATAAGCCGCTGAAGGATATCGGCCGCTATATCCCGA TGGCGTCCAGCGAACTGCGCTTCAGTAAACTGCAACTGAACGTCAGCATTCCCCAGGCGGCGATGAGCGCCGCGGCCCGC GGCCAGGTGGATCCCTCGCAGTGGGATGAGGGCGTTCCCGCCGCGTTGCTGAACTACAGCCTCAGCGGCAGCAATACCTG GCGCGACCACCAGAGCGGCTCAGAGGATAACTACTATGCCAACCTGCAAAGCGGCCTGAACCTCGGCGCGTGGCGGCTGC GCAACTATTCCACCTGGAATTACGACGAGGACAATGGCAGCCACTGGGATTCGGTGAACACGTATCTTCAGCGGGATATC CAGCGCCTGCAGGGGCAACTGACGCTCGGCGACAGCTACACCCCTTCCGATATCTTCGACAGCGTGCAGTTCCGCGGCGC GCAACTGGCGTCCGACGACAATATGCTGCCGGATAGTCTGCGCGGGTTCGCTCCGGTTATCCGCGGCATTGCGCAGTCGA ACGCGCAGGTGACGGTGAAGCAGAACGGCTACATCATCTACCAGAGCTACGTCGCGCCGGGTGCGTTCGCCATCAGCGAC CTCTACCCGACCTCGGGCAGTGGCGACCTGGAAGTGACCATTAAGGAGGCCGACGGCAGCGAGCGCACCTTTATTCAGCC ATTTTCAGCCGTTCCCATTATGCAGCGCGAGGGTCGCCTGAAATACGCCCTGACTGCCGGGAAGTATCGCAGCGGCAACA ACGACAGCGATGAGCCGCAGTTCGGCCAGGTGACGGCGATTTACGGCCTGCCGCACGCCATCACCATTTATGGCGGCACG CTGTACTCGGAGGACTATCAGTCCGGGGCGGCGGGGCTGGGCTTTGGCCTCGGCACGCTCGGTTCGCTATCCGTCGATAT CACCGCTGCGCACACCACGCTCAACAACGATGAAACCCACGACGGCCAGTCGTACCGGGTGCAGTACTCAAAGGATTTCC AGGCCACCGACACCAGCTTCACCCTGGCGGCGTACCGCTACTCCACCGAAGGCTTTTACACCTTCCAGGAGGCCAATGAC CTGCGGACGGACAGCGATGACGGCTGGCGGATGCAGTACAACAAGCGGCAGAAACTCCAGCTCGACCTCAGCCAGAGCCT CGGCAGCTACGGCTCGTTCTTTATCTCCGGTTACCAGCAGGATTACTGGCACGAGGACGGCTACGAGCGCACCCTCAGCA CCGGCTGGAACGGCAATATCAATGGCGTCAGCTACAGCGACTATCCTGACAGCACCCAGCCTGCCGACCAGCAGCTGGCC TTCAGCATGCAGGTGCCGCTCAGCCGCTTCCTGCCCAACGCCTGGGCCAGCTACAGCATCAACACCGCGAAGCACGGCGA TACCCGCCAGCAGGTGGGACTTAACGGCACGGCGCTTGCCGACAACAACCTCAGCTACAGCCTCCAGCAGAGCTACACCA ACCATGGCGTGGGCGGCTCCGGCAACATCAACGCCGATTACAAAGGCGGCTGGGGCGAAGTAACCGGTGGCTACAACTAC GACGATGACAGCCAGCAGGTGAACTACGGCCTGAAGGGCGGGATTGTCGCGCATCCACATGGCATCACTTTCGGGCAACC GCTCGGCGACTCGCTGGCCGTGGTGAGCGCGCCCGGTGCGGAGGATGCAAAAGTGCAGAACAACACCGGGGTGTACACCG ACTGGCGCGGTTATGCGGTGGTGCCTTACGTCAACCCGTACAAGAAAAACCGCATCGCGCTGGATACCAGCACGCTCGGC GATGAGGTGGATATCGACACCGCCGTCCAGACTGTGACGCCGACGCAGGGTGCGGTGGTAATGGCTGACTTCAACACTCG CGTCGGACGGCGCGTGCTGATGACGCTGCTTTACCGTGGGCTGCCGGTGCCGTTTGGCGCGCAGGCGAAGCTGAAGGAAG GCGGCAGCGGCATCGTTGGCGATGATGGCCAGGTCTATCTCACCGGCGTGCCGGATGAGGGCGATATTGCGGTGAGCTGG AACGGGACGCGGCAGTGCATGGTGCTTTACCGGCTGCCGGAGAATGCCGGAAACGTTCCGGTGACGGAAACTGAACAGGA GTGTCGTTAA
Upstream 100 bases:
>100_bases CACGATCCCTTCCGCCACGGCGTCCCGCGTTAGCTGGCAGGCCATCAGCGACTACGGCGGCGTCAGCCAGTTCGAAAGCC GCCAGCTGTGAGGGGAGAGC
Downstream 100 bases:
>100_bases ATGAAGGTGTTATTAAAATCCGGCTGGCTGGTGCTGGCGTTGTGGCTGGTTTCTTTTGGTACACAGGCCTCCTGTGGTTT CGCTTCCGGAGTGAGTAGTG
Product: long polar fimbrial outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MMNNPERRTMMILLALLLVMILLLAYFRNAEARETFNSHALEIDNPGQPVADLSTFAEADGQLPGVYRVTVYVNGEQQGE AQDIAFTAGPDKKLRAQITPAMLKAWGVKTDAFPALAALPPDKPLKDIGRYIPMASSELRFSKLQLNVSIPQAAMSAAAR GQVDPSQWDEGVPAALLNYSLSGSNTWRDHQSGSEDNYYANLQSGLNLGAWRLRNYSTWNYDEDNGSHWDSVNTYLQRDI QRLQGQLTLGDSYTPSDIFDSVQFRGAQLASDDNMLPDSLRGFAPVIRGIAQSNAQVTVKQNGYIIYQSYVAPGAFAISD LYPTSGSGDLEVTIKEADGSERTFIQPFSAVPIMQREGRLKYALTAGKYRSGNNDSDEPQFGQVTAIYGLPHAITIYGGT LYSEDYQSGAAGLGFGLGTLGSLSVDITAAHTTLNNDETHDGQSYRVQYSKDFQATDTSFTLAAYRYSTEGFYTFQEAND LRTDSDDGWRMQYNKRQKLQLDLSQSLGSYGSFFISGYQQDYWHEDGYERTLSTGWNGNINGVSYSDYPDSTQPADQQLA FSMQVPLSRFLPNAWASYSINTAKHGDTRQQVGLNGTALADNNLSYSLQQSYTNHGVGGSGNINADYKGGWGEVTGGYNY DDDSQQVNYGLKGGIVAHPHGITFGQPLGDSLAVVSAPGAEDAKVQNNTGVYTDWRGYAVVPYVNPYKKNRIALDTSTLG DEVDIDTAVQTVTPTQGAVVMADFNTRVGRRVLMTLLYRGLPVPFGAQAKLKEGGSGIVGDDGQVYLTGVPDEGDIAVSW NGTRQCMVLYRLPENAGNVPVTETEQECR
Sequences:
>Translated_829_residues MMNNPERRTMMILLALLLVMILLLAYFRNAEARETFNSHALEIDNPGQPVADLSTFAEADGQLPGVYRVTVYVNGEQQGE AQDIAFTAGPDKKLRAQITPAMLKAWGVKTDAFPALAALPPDKPLKDIGRYIPMASSELRFSKLQLNVSIPQAAMSAAAR GQVDPSQWDEGVPAALLNYSLSGSNTWRDHQSGSEDNYYANLQSGLNLGAWRLRNYSTWNYDEDNGSHWDSVNTYLQRDI QRLQGQLTLGDSYTPSDIFDSVQFRGAQLASDDNMLPDSLRGFAPVIRGIAQSNAQVTVKQNGYIIYQSYVAPGAFAISD LYPTSGSGDLEVTIKEADGSERTFIQPFSAVPIMQREGRLKYALTAGKYRSGNNDSDEPQFGQVTAIYGLPHAITIYGGT LYSEDYQSGAAGLGFGLGTLGSLSVDITAAHTTLNNDETHDGQSYRVQYSKDFQATDTSFTLAAYRYSTEGFYTFQEAND LRTDSDDGWRMQYNKRQKLQLDLSQSLGSYGSFFISGYQQDYWHEDGYERTLSTGWNGNINGVSYSDYPDSTQPADQQLA FSMQVPLSRFLPNAWASYSINTAKHGDTRQQVGLNGTALADNNLSYSLQQSYTNHGVGGSGNINADYKGGWGEVTGGYNY DDDSQQVNYGLKGGIVAHPHGITFGQPLGDSLAVVSAPGAEDAKVQNNTGVYTDWRGYAVVPYVNPYKKNRIALDTSTLG DEVDIDTAVQTVTPTQGAVVMADFNTRVGRRVLMTLLYRGLPVPFGAQAKLKEGGSGIVGDDGQVYLTGVPDEGDIAVSW NGTRQCMVLYRLPENAGNVPVTETEQECR >Mature_829_residues MMNNPERRTMMILLALLLVMILLLAYFRNAEARETFNSHALEIDNPGQPVADLSTFAEADGQLPGVYRVTVYVNGEQQGE AQDIAFTAGPDKKLRAQITPAMLKAWGVKTDAFPALAALPPDKPLKDIGRYIPMASSELRFSKLQLNVSIPQAAMSAAAR GQVDPSQWDEGVPAALLNYSLSGSNTWRDHQSGSEDNYYANLQSGLNLGAWRLRNYSTWNYDEDNGSHWDSVNTYLQRDI QRLQGQLTLGDSYTPSDIFDSVQFRGAQLASDDNMLPDSLRGFAPVIRGIAQSNAQVTVKQNGYIIYQSYVAPGAFAISD LYPTSGSGDLEVTIKEADGSERTFIQPFSAVPIMQREGRLKYALTAGKYRSGNNDSDEPQFGQVTAIYGLPHAITIYGGT LYSEDYQSGAAGLGFGLGTLGSLSVDITAAHTTLNNDETHDGQSYRVQYSKDFQATDTSFTLAAYRYSTEGFYTFQEAND LRTDSDDGWRMQYNKRQKLQLDLSQSLGSYGSFFISGYQQDYWHEDGYERTLSTGWNGNINGVSYSDYPDSTQPADQQLA FSMQVPLSRFLPNAWASYSINTAKHGDTRQQVGLNGTALADNNLSYSLQQSYTNHGVGGSGNINADYKGGWGEVTGGYNY DDDSQQVNYGLKGGIVAHPHGITFGQPLGDSLAVVSAPGAEDAKVQNNTGVYTDWRGYAVVPYVNPYKKNRIALDTSTLG DEVDIDTAVQTVTPTQGAVVMADFNTRVGRRVLMTLLYRGLPVPFGAQAKLKEGGSGIVGDDGQVYLTGVPDEGDIAVSW NGTRQCMVLYRLPENAGNVPVTETEQECR
Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1787172, Length=850, Percent_Identity=45.8823529411765, Blast_Score=705, Evalue=0.0, Organism=Escherichia coli, GI1790772, Length=837, Percent_Identity=44.9223416965352, Blast_Score=664, Evalue=0.0, Organism=Escherichia coli, GI1789533, Length=843, Percent_Identity=42.9418742586002, Blast_Score=647, Evalue=0.0, Organism=Escherichia coli, GI1786744, Length=866, Percent_Identity=40.4157043879908, Blast_Score=621, Evalue=1e-179, Organism=Escherichia coli, GI1786332, Length=794, Percent_Identity=35.5163727959698, Blast_Score=412, Evalue=1e-116, Organism=Escherichia coli, GI1788427, Length=829, Percent_Identity=29.6743063932449, Blast_Score=351, Evalue=1e-97, Organism=Escherichia coli, GI87081778, Length=830, Percent_Identity=31.0843373493976, Blast_Score=290, Evalue=2e-79, Organism=Escherichia coli, GI1789610, Length=801, Percent_Identity=26.0923845193508, Blast_Score=162, Evalue=7e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 90646; Mature: 90646
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNNPERRTMMILLALLLVMILLLAYFRNAEARETFNSHALEIDNPGQPVADLSTFAEAD CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHCC GQLPGVYRVTVYVNGEQQGEAQDIAFTAGPDKKLRAQITPAMLKAWGVKTDAFPALAALP CCCCCEEEEEEEECCCCCCCCCEEEEECCCCHHHEECCCHHHHHHHCCCCCCCCHHCCCC PDKPLKDIGRYIPMASSELRFSKLQLNVSIPQAAMSAAARGQVDPSQWDEGVPAALLNYS CCCCHHHHHHHCCCCCCCCEEEEEEEEEECCHHHHHHHHCCCCCHHHHCCCCCCHHHEEE LSGSNTWRDHQSGSEDNYYANLQSGLNLGAWRLRNYSTWNYDEDNGSHWDSVNTYLQRDI CCCCCCCCCCCCCCCCCEEEEHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH QRLQGQLTLGDSYTPSDIFDSVQFRGAQLASDDNMLPDSLRGFAPVIRGIAQSNAQVTVK HHHCCEEEECCCCCCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE QNGYIIYQSYVAPGAFAISDLYPTSGSGDLEVTIKEADGSERTFIQPFSAVPIMQREGRL CCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCHHCCCCE KYALTAGKYRSGNNDSDEPQFGQVTAIYGLPHAITIYGGTLYSEDYQSGAAGLGFGLGTL EEEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCEEECCCCCCCCCCCCCCCCCC GSLSVDITAAHTTLNNDETHDGQSYRVQYSKDFQATDTSFTLAAYRYSTEGFYTFQEAND CCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEECCCC LRTDSDDGWRMQYNKRQKLQLDLSQSLGSYGSFFISGYQQDYWHEDGYERTLSTGWNGNI CCCCCCCCEEEECCCCCEEEEEHHHHCCCCCCEEEECCCHHCCCCCCCHHHHCCCCCCCC NGVSYSDYPDSTQPADQQLAFSMQVPLSRFLPNAWASYSINTAKHGDTRQQVGLNGTALA CCEECCCCCCCCCCCCHHEEEEEECCHHHHCCCCCCCCEECCCCCCCCHHHCCCCCEEEE DNNLSYSLQQSYTNHGVGGSGNINADYKGGWGEVTGGYNYDDDSQQVNYGLKGGIVAHPH CCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEECCC GITFGQPLGDSLAVVSAPGAEDAKVQNNTGVYTDWRGYAVVPYVNPYKKNRIALDTSTLG CCCCCCCCCCCEEEEECCCCCCCEEECCCCEEECCCCEEEEECCCCCCCCEEEEECCCCC DEVDIDTAVQTVTPTQGAVVMADFNTRVGRRVLMTLLYRGLPVPFGAQAKLKEGGSGIVG CCCCCCHHHEEECCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCEEEC DDGQVYLTGVPDEGDIAVSWNGTRQCMVLYRLPENAGNVPVTETEQECR CCCEEEEEECCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHCC >Mature Secondary Structure MMNNPERRTMMILLALLLVMILLLAYFRNAEARETFNSHALEIDNPGQPVADLSTFAEAD CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHCC GQLPGVYRVTVYVNGEQQGEAQDIAFTAGPDKKLRAQITPAMLKAWGVKTDAFPALAALP CCCCCEEEEEEEECCCCCCCCCEEEEECCCCHHHEECCCHHHHHHHCCCCCCCCHHCCCC PDKPLKDIGRYIPMASSELRFSKLQLNVSIPQAAMSAAARGQVDPSQWDEGVPAALLNYS CCCCHHHHHHHCCCCCCCCEEEEEEEEEECCHHHHHHHHCCCCCHHHHCCCCCCHHHEEE LSGSNTWRDHQSGSEDNYYANLQSGLNLGAWRLRNYSTWNYDEDNGSHWDSVNTYLQRDI CCCCCCCCCCCCCCCCCEEEEHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH QRLQGQLTLGDSYTPSDIFDSVQFRGAQLASDDNMLPDSLRGFAPVIRGIAQSNAQVTVK HHHCCEEEECCCCCCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE QNGYIIYQSYVAPGAFAISDLYPTSGSGDLEVTIKEADGSERTFIQPFSAVPIMQREGRL CCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCHHCCCCE KYALTAGKYRSGNNDSDEPQFGQVTAIYGLPHAITIYGGTLYSEDYQSGAAGLGFGLGTL EEEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCEEECCCCCCCCCCCCCCCCCC GSLSVDITAAHTTLNNDETHDGQSYRVQYSKDFQATDTSFTLAAYRYSTEGFYTFQEAND CCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEECCCC LRTDSDDGWRMQYNKRQKLQLDLSQSLGSYGSFFISGYQQDYWHEDGYERTLSTGWNGNI CCCCCCCCEEEECCCCCEEEEEHHHHCCCCCCEEEECCCHHCCCCCCCHHHHCCCCCCCC NGVSYSDYPDSTQPADQQLAFSMQVPLSRFLPNAWASYSINTAKHGDTRQQVGLNGTALA CCEECCCCCCCCCCCCHHEEEEEECCHHHHCCCCCCCCEECCCCCCCCHHHCCCCCEEEE DNNLSYSLQQSYTNHGVGGSGNINADYKGGWGEVTGGYNYDDDSQQVNYGLKGGIVAHPH CCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEECCC GITFGQPLGDSLAVVSAPGAEDAKVQNNTGVYTDWRGYAVVPYVNPYKKNRIALDTSTLG CCCCCCCCCCCEEEEECCCCCCCEEECCCCEEECCCCEEEEECCCCCCCCEEEEECCCCC DEVDIDTAVQTVTPTQGAVVMADFNTRVGRRVLMTLLYRGLPVPFGAQAKLKEGGSGIVG CCCCCCHHHEEECCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCEEEC DDGQVYLTGVPDEGDIAVSWNGTRQCMVLYRLPENAGNVPVTETEQECR CCCEEEEEECCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7721701; 11677609 [H]