Click here to switch to the map view.

The map label for this gene is lpfC [H]

Identifier: 238892562

GI number: 238892562

Start: 345608

End: 348187

Strand: Direct

Name: lpfC [H]

Synonym: KP1_0336

Alternate gene names: 238892562

Gene position: 345608-348187 (Clockwise)

Preceding gene: 238892561

Following gene: 238892563

Centisome position: 6.58

GC content: 55.23

Gene sequence:

>2580_bases
ATGATTATGGTATGTCAGGGAAGAAATATACCGCTATCATTCAGTAGCGTTGAGCTGCTATTTTCAACTAAAAGTATCTG
CGTCGCTATTATTCTGTGCCTAAGTACTCTGCCCTCTCGCGCGGAGGCCGGCGAATATTTCAACCCAAATTTACTCGAAG
TCGCTGAGAGTCCTGCGGCTTCGGTTGATCTATCCTATTTTTCGCAAGATGGCATACCGCCGGGCACCTATCACCTGGAT
GTTTACATCAACGATAAGTACGTCAGTTCAGACTCGCTGACTTTTCAGGAAATTAGCCATGACGCAGGCGCGACTGCTTC
TCCCTGTCTGTCCGCAGAGTATCTGAATTCATGGTTGATTAATACCACCGCCTATCCGCAGCTGTTCGAGGCAGGGGAAA
CCTGCGCCCGGCTGTCGGCGATCCCCGGGATGACGTTCTCGGTATCTCTTGCCCAGCAGCGGATTGATTTTACCGTGCCG
CAGGCCGCCATGCTGAATCGCCCCAGAGACTATATTCCCGAGAGCCAGTGGCAACAGGGGATCAACGCCGGTCTTCTCAA
CTATAGCGTCACCGGGCAGCGTAATGCGCCGCGGCATAACGGCGCCACTATCGACAGTCAGTTCGTCAGCCTGCAGCCAG
GGCTGAATCTGGGACCATGGCGCCTGCGCAACTACAGCACCTATAGCCACAGCGATAACAACAGCCGCTGGGAGTCGGTT
TACTCCTATCTTGCCCGCGATATTCACACCCTACGCAGCCAGCTGGTGGTCGGTAATACGTATACCTCTTCCGGCATTTT
CGACAGTTTGAGTTTTACCGGTCTGCAGCTCAGTTCGGACAAAGAGATGCTGCCGGATAGCCTGCATGGCTTTGCGCCGA
CGATTCGAGGGATCGCGCGCACCACCGCGGAGGTCTCGGTTTATCAGAATGGTTACAGCATTTATAAAACCACCGTCGCT
CCCGGCGCCTTTGAAATTAACGATCTGTACGCCACCGGCAGCGCCGGCGACCTGTACGTCAACATTAAAGAGTCTGACGG
CAGCGAGCAAAACTTTGTGGTGCCTTTCGCGTCGCTGGCGATCCTGCAACGTGAGGGCCAGCTGGACTATGCGCTGAGCA
GCGGCAGGACGCGATCGGGCAGCTCCGACGATAAAGAATATAACTTTATTCAGTCTTCCCTGGCCTATGGCGCCACCAGC
AACATCACTCTTTATACTGGTTTCCAGCAGGCGGAAGATAAATATACCAACCTGTTGTTAGGCGCTGGCTTTAACCTCGG
TACTATCGGTGCGCTGTCGTTTGATGGCTCTCAGTCGTGGGCCGACGTGAAAACCAGCGATACGGCCTCGTCAACCAGTA
AAGAGCAAGGGCAATCGTATCGCGTCCGCTTCAGTAAAAGCTTTCTGCAGACGGGCACCAGCTTTTCCGTGGCTGGTTAT
CGCTACTCCACCTCGGGATATTATTCGTTTCAGGACTTTGTCGATAACTCTTCCACACAGCGCGACTGCTGTACGCAGAG
CGGCAGAACGAAAGGCCGGTTTGACGCATCGCTGTCGCAGACGCTGTTTGGCTATGGTTCGCTCTCGCTTTCGTTGGTCA
ATGAGACCTACTGGGACAGTTCGCGTATGGAATCGGTGGGCGTGGGTTATAGCGGGTCGATTGGCAAGGCCTCCTACTTT
ATTAACTATTCCTATAACCGCAATGTGCAAAGCAGCGATGACAGCGACAATAACCGGCCGGCCAGCGATACGGTCGTCTC
CCTGACGTTAAGTATTCCGCTTGGCGAGACGCTCTCGGCAAATTACACCATGAACCATGGTCGGCATAACGACACCACGC
ACAGCGTGGGGCTCAACGGCTCGGCGTTCGAGGATCGTTCCCTGAACTGGAGCGTACTGGAAGGGTACAACACGCAGGAT
AAAAGCACCTCCGGTAACCTCAGCGTCAACTACCAGGGTTCGAAAGGGGATGTGGCTGGCGGCTATGGCTACGACCGCTA
CAGCAATCACTACAACTATTCGCTGCGCGGGGGCATGGTCGCCCATGCGGGCGGACTCACGCTATCACGCTTTCTGGGCG
AGAGTTCTGCGCTGGTCGAAACGCCTGGCGTCAGCGATGTGACAGTGCGCGGTCAGACAAACGTGACGACGGATGCCGCC
GGATATGCGGTGGTGCCTTACGTCCGTCCGTACCATCGTAACAGCCTGGCGCTGGATGAACAGGAAATACCTGGCGCTGA
AGTGGATAACGTCGCCAGAACGGTGGTTCCGACGCGCAATGCGATCGTCAAAGTGAAGTACGACACGCGAATTGGCTATA
AGGCGATGCTCACTCTGCGTACCCGCAATGGCGTGGTGCCTTTCGGCGCGCTGGTGACCCTCGATAATGATCACGGTAGC
GCGTCGCGCAGCAATATCGTTGGCGATGAGGGGCAGGTGTATCTGACGGGGCTGCAGAAAAAAGGCCAGCTGTTAGCGCG
CTGGGGGGAGAAAAGCAGTGAGCAGTGCACCGTTCATTATGACTTCTCCGGCATGGCCCTTGGCGACGATATTCTGTTCT
ATCAGGCCGCATGTCGGTAA

Upstream 100 bases:

>100_bases
TCTGGCGCATGGTTTGCTGCCCCGTTTTCCACCTTAAAAATACCCGTGCAGAGTAGCCTGTCGGCGACAGGAAAAAAAGA
GATCACATGGAGCGTGATTA

Downstream 100 bases:

>100_bases
TGGATGCAGGTTTTCAACATGGAAGAGGGGCTGATATGAATATGCGAGACGGCAGCACAAGGGGCCTCCTGGTGGCCAGC
CTTTTGCTGCTCTCCCTTCC

Product: putative outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 859; Mature: 859

Protein sequence:

>859_residues
MIMVCQGRNIPLSFSSVELLFSTKSICVAIILCLSTLPSRAEAGEYFNPNLLEVAESPAASVDLSYFSQDGIPPGTYHLD
VYINDKYVSSDSLTFQEISHDAGATASPCLSAEYLNSWLINTTAYPQLFEAGETCARLSAIPGMTFSVSLAQQRIDFTVP
QAAMLNRPRDYIPESQWQQGINAGLLNYSVTGQRNAPRHNGATIDSQFVSLQPGLNLGPWRLRNYSTYSHSDNNSRWESV
YSYLARDIHTLRSQLVVGNTYTSSGIFDSLSFTGLQLSSDKEMLPDSLHGFAPTIRGIARTTAEVSVYQNGYSIYKTTVA
PGAFEINDLYATGSAGDLYVNIKESDGSEQNFVVPFASLAILQREGQLDYALSSGRTRSGSSDDKEYNFIQSSLAYGATS
NITLYTGFQQAEDKYTNLLLGAGFNLGTIGALSFDGSQSWADVKTSDTASSTSKEQGQSYRVRFSKSFLQTGTSFSVAGY
RYSTSGYYSFQDFVDNSSTQRDCCTQSGRTKGRFDASLSQTLFGYGSLSLSLVNETYWDSSRMESVGVGYSGSIGKASYF
INYSYNRNVQSSDDSDNNRPASDTVVSLTLSIPLGETLSANYTMNHGRHNDTTHSVGLNGSAFEDRSLNWSVLEGYNTQD
KSTSGNLSVNYQGSKGDVAGGYGYDRYSNHYNYSLRGGMVAHAGGLTLSRFLGESSALVETPGVSDVTVRGQTNVTTDAA
GYAVVPYVRPYHRNSLALDEQEIPGAEVDNVARTVVPTRNAIVKVKYDTRIGYKAMLTLRTRNGVVPFGALVTLDNDHGS
ASRSNIVGDEGQVYLTGLQKKGQLLARWGEKSSEQCTVHYDFSGMALGDDILFYQAACR

Sequences:

>Translated_859_residues
MIMVCQGRNIPLSFSSVELLFSTKSICVAIILCLSTLPSRAEAGEYFNPNLLEVAESPAASVDLSYFSQDGIPPGTYHLD
VYINDKYVSSDSLTFQEISHDAGATASPCLSAEYLNSWLINTTAYPQLFEAGETCARLSAIPGMTFSVSLAQQRIDFTVP
QAAMLNRPRDYIPESQWQQGINAGLLNYSVTGQRNAPRHNGATIDSQFVSLQPGLNLGPWRLRNYSTYSHSDNNSRWESV
YSYLARDIHTLRSQLVVGNTYTSSGIFDSLSFTGLQLSSDKEMLPDSLHGFAPTIRGIARTTAEVSVYQNGYSIYKTTVA
PGAFEINDLYATGSAGDLYVNIKESDGSEQNFVVPFASLAILQREGQLDYALSSGRTRSGSSDDKEYNFIQSSLAYGATS
NITLYTGFQQAEDKYTNLLLGAGFNLGTIGALSFDGSQSWADVKTSDTASSTSKEQGQSYRVRFSKSFLQTGTSFSVAGY
RYSTSGYYSFQDFVDNSSTQRDCCTQSGRTKGRFDASLSQTLFGYGSLSLSLVNETYWDSSRMESVGVGYSGSIGKASYF
INYSYNRNVQSSDDSDNNRPASDTVVSLTLSIPLGETLSANYTMNHGRHNDTTHSVGLNGSAFEDRSLNWSVLEGYNTQD
KSTSGNLSVNYQGSKGDVAGGYGYDRYSNHYNYSLRGGMVAHAGGLTLSRFLGESSALVETPGVSDVTVRGQTNVTTDAA
GYAVVPYVRPYHRNSLALDEQEIPGAEVDNVARTVVPTRNAIVKVKYDTRIGYKAMLTLRTRNGVVPFGALVTLDNDHGS
ASRSNIVGDEGQVYLTGLQKKGQLLARWGEKSSEQCTVHYDFSGMALGDDILFYQAACR
>Mature_859_residues
MIMVCQGRNIPLSFSSVELLFSTKSICVAIILCLSTLPSRAEAGEYFNPNLLEVAESPAASVDLSYFSQDGIPPGTYHLD
VYINDKYVSSDSLTFQEISHDAGATASPCLSAEYLNSWLINTTAYPQLFEAGETCARLSAIPGMTFSVSLAQQRIDFTVP
QAAMLNRPRDYIPESQWQQGINAGLLNYSVTGQRNAPRHNGATIDSQFVSLQPGLNLGPWRLRNYSTYSHSDNNSRWESV
YSYLARDIHTLRSQLVVGNTYTSSGIFDSLSFTGLQLSSDKEMLPDSLHGFAPTIRGIARTTAEVSVYQNGYSIYKTTVA
PGAFEINDLYATGSAGDLYVNIKESDGSEQNFVVPFASLAILQREGQLDYALSSGRTRSGSSDDKEYNFIQSSLAYGATS
NITLYTGFQQAEDKYTNLLLGAGFNLGTIGALSFDGSQSWADVKTSDTASSTSKEQGQSYRVRFSKSFLQTGTSFSVAGY
RYSTSGYYSFQDFVDNSSTQRDCCTQSGRTKGRFDASLSQTLFGYGSLSLSLVNETYWDSSRMESVGVGYSGSIGKASYF
INYSYNRNVQSSDDSDNNRPASDTVVSLTLSIPLGETLSANYTMNHGRHNDTTHSVGLNGSAFEDRSLNWSVLEGYNTQD
KSTSGNLSVNYQGSKGDVAGGYGYDRYSNHYNYSLRGGMVAHAGGLTLSRFLGESSALVETPGVSDVTVRGQTNVTTDAA
GYAVVPYVRPYHRNSLALDEQEIPGAEVDNVARTVVPTRNAIVKVKYDTRIGYKAMLTLRTRNGVVPFGALVTLDNDHGS
ASRSNIVGDEGQVYLTGLQKKGQLLARWGEKSSEQCTVHYDFSGMALGDDILFYQAACR

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=855, Percent_Identity=37.0760233918129, Blast_Score=535, Evalue=1e-153,
Organism=Escherichia coli, GI1787172, Length=856, Percent_Identity=35.981308411215, Blast_Score=526, Evalue=1e-150,
Organism=Escherichia coli, GI1786744, Length=873, Percent_Identity=34.9369988545246, Blast_Score=498, Evalue=1e-142,
Organism=Escherichia coli, GI1789533, Length=824, Percent_Identity=37.378640776699, Blast_Score=490, Evalue=1e-139,
Organism=Escherichia coli, GI1786332, Length=848, Percent_Identity=33.1367924528302, Blast_Score=351, Evalue=1e-97,
Organism=Escherichia coli, GI1788427, Length=780, Percent_Identity=30.1282051282051, Blast_Score=296, Evalue=3e-81,
Organism=Escherichia coli, GI87081778, Length=841, Percent_Identity=28.5374554102259, Blast_Score=282, Evalue=5e-77,
Organism=Escherichia coli, GI1789610, Length=808, Percent_Identity=23.6386138613861, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 93568; Mature: 93568

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMVCQGRNIPLSFSSVELLFSTKSICVAIILCLSTLPSRAEAGEYFNPNLLEVAESPAA
CEEEECCCCCCEECCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCC
SVDLSYFSQDGIPPGTYHLDVYINDKYVSSDSLTFQEISHDAGATASPCLSAEYLNSWLI
EEEEHHHHCCCCCCCEEEEEEEECCEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHCEEE
NTTAYPQLFEAGETCARLSAIPGMTFSVSLAQQRIDFTVPQAAMLNRPRDYIPESQWQQG
CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCHHHHCCCHHCCCHHHHHCC
INAGLLNYSVTGQRNAPRHNGATIDSQFVSLQPGLNLGPWRLRNYSTYSHSDNNSRWESV
CCCCEEEEEECCCCCCCCCCCCEECCEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHH
YSYLARDIHTLRSQLVVGNTYTSSGIFDSLSFTGLQLSSDKEMLPDSLHGFAPTIRGIAR
HHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCCHHHCCHHHHHHHHHHHHHHH
TTAEVSVYQNGYSIYKTTVAPGAFEINDLYATGSAGDLYVNIKESDGSEQNFVVPFASLA
CCEEEEEEECCEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCEEEEEHHHEE
ILQREGQLDYALSSGRTRSGSSDDKEYNFIQSSLAYGATSNITLYTGFQQAEDKYTNLLL
HHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHEEEE
GAGFNLGTIGALSFDGSQSWADVKTSDTASSTSKEQGQSYRVRFSKSFLQTGTSFSVAGY
ECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHCCCEEEEEEEHHHHHCCCCEEEEEE
RYSTSGYYSFQDFVDNSSTQRDCCTQSGRTKGRFDASLSQTLFGYGSLSLSLVNETYWDS
EECCCCCEEHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEEEEHHHCCC
SRMESVGVGYSGSIGKASYFINYSYNRNVQSSDDSDNNRPASDTVVSLTLSIPLGETLSA
CHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
NYTMNHGRHNDTTHSVGLNGSAFEDRSLNWSVLEGYNTQDKSTSGNLSVNYQGSKGDVAG
CEEECCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
GYGYDRYSNHYNYSLRGGMVAHAGGLTLSRFLGESSALVETPGVSDVTVRGQTNVTTDAA
CCCCCCCCCCEEEEECCCEEEECCCCHHHHHHCCCCCEEECCCCCEEEEECCCCCEECCC
GYAVVPYVRPYHRNSLALDEQEIPGAEVDNVARTVVPTRNAIVKVKYDTRIGYKAMLTLR
CEEEECCCCCCCCCCCCCCHHCCCCCCHHHHHHHEECCCCEEEEEEECCCCCEEEEEEEE
TRNGVVPFGALVTLDNDHGSASRSNIVGDEGQVYLTGLQKKGQLLARWGEKSSEQCTVHY
ECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCEEEEEE
DFSGMALGDDILFYQAACR
CCCCEEECCCEEEEEECCC
>Mature Secondary Structure
MIMVCQGRNIPLSFSSVELLFSTKSICVAIILCLSTLPSRAEAGEYFNPNLLEVAESPAA
CEEEECCCCCCEECCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCC
SVDLSYFSQDGIPPGTYHLDVYINDKYVSSDSLTFQEISHDAGATASPCLSAEYLNSWLI
EEEEHHHHCCCCCCCEEEEEEEECCEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHCEEE
NTTAYPQLFEAGETCARLSAIPGMTFSVSLAQQRIDFTVPQAAMLNRPRDYIPESQWQQG
CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCHHHHCCCHHCCCHHHHHCC
INAGLLNYSVTGQRNAPRHNGATIDSQFVSLQPGLNLGPWRLRNYSTYSHSDNNSRWESV
CCCCEEEEEECCCCCCCCCCCCEECCEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHH
YSYLARDIHTLRSQLVVGNTYTSSGIFDSLSFTGLQLSSDKEMLPDSLHGFAPTIRGIAR
HHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCCHHHCCHHHHHHHHHHHHHHH
TTAEVSVYQNGYSIYKTTVAPGAFEINDLYATGSAGDLYVNIKESDGSEQNFVVPFASLA
CCEEEEEEECCEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCEEEEEHHHEE
ILQREGQLDYALSSGRTRSGSSDDKEYNFIQSSLAYGATSNITLYTGFQQAEDKYTNLLL
HHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHEEEE
GAGFNLGTIGALSFDGSQSWADVKTSDTASSTSKEQGQSYRVRFSKSFLQTGTSFSVAGY
ECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHCCCEEEEEEEHHHHHCCCCEEEEEE
RYSTSGYYSFQDFVDNSSTQRDCCTQSGRTKGRFDASLSQTLFGYGSLSLSLVNETYWDS
EECCCCCEEHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEEEEHHHCCC
SRMESVGVGYSGSIGKASYFINYSYNRNVQSSDDSDNNRPASDTVVSLTLSIPLGETLSA
CHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
NYTMNHGRHNDTTHSVGLNGSAFEDRSLNWSVLEGYNTQDKSTSGNLSVNYQGSKGDVAG
CEEECCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
GYGYDRYSNHYNYSLRGGMVAHAGGLTLSRFLGESSALVETPGVSDVTVRGQTNVTTDAA
CCCCCCCCCCEEEEECCCEEEECCCCHHHHHHCCCCCEEECCCCCEEEEECCCCCEECCC
GYAVVPYVRPYHRNSLALDEQEIPGAEVDNVARTVVPTRNAIVKVKYDTRIGYKAMLTLR
CEEEECCCCCCCCCCCCCCHHCCCCCCHHHHHHHEECCCCEEEEEEECCCCCEEEEEEEE
TRNGVVPFGALVTLDNDHGSASRSNIVGDEGQVYLTGLQKKGQLLARWGEKSSEQCTVHY
ECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCEEEEEE
DFSGMALGDDILFYQAACR
CCCCEEECCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]