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The map label for this gene is lpfB [H]

Identifier: 238892561

GI number: 238892561

Start: 344965

End: 345654

Strand: Direct

Name: lpfB [H]

Synonym: KP1_0335

Alternate gene names: 238892561

Gene position: 344965-345654 (Clockwise)

Preceding gene: 238892560

Following gene: 238892562

Centisome position: 6.57

GC content: 44.78

Gene sequence:

>690_bases
ATGAGATATCCTTTTTTTGCGATCGGTTTATTGCTGTCTTCTTCCTTCGCGCAGGCCAGCGTGGTCGTTGGCGGTACGCG
TCTGGTTTTTGATGGTACGAAAAATAACGCTGTAATAACGGTTGAGAATAAAGATCAGAACAGCAATATCGTTCAGTCCT
GGCTCTCGGTGGTTGATGCAGCCTCACCCGCCAAAGACGCATTTATTATTACGCCGCCGCTGTTTCGTCTCAAAGCCGGG
GAGAAAGGATTTGTCCGCGTAGTTCGATCAGGAAAGAAATTACCCGACGATCGCGAGTCGATGTTTTGGCTCAATATTAA
AGGGATCCCGGCAACAGAATATGTACCTGATAAAAATGTCGTACAGTTTGCGATTAATTCGAAAATAAAATTGATTTATC
GACCCGCTGCGTTAAAAGGTAATACACCGGAAGCGTACGCTGAAAAATTACAGTGGGGGAAAGAGGGGACGTCGGTGACG
GTAAAAAATAACTCACCGCTGTATATGAATTTCTCACAGGTTAGCCTTAACGGTAAAAATATTTCTGGCGCATGGTTTGC
TGCCCCGTTTTCCACCTTAAAAATACCCGTGCAGAGTAGCCTGTCGGCGACAGGAAAAAAAGAGATCACATGGAGCGTGA
TTAATGATTATGGTATGTCAGGGAAGAAATATACCGCTATCATTCAGTAG

Upstream 100 bases:

>100_bases
CGTTCAGACAACCGTGACTTATAACGTGACCTATCATTAATTCGGCTTCTTGTTGAATGGAGAAAGGGGAATCGCCTGCT
ATTCCCCTTAAATTAAACAT

Downstream 100 bases:

>100_bases
CGTTGAGCTGCTATTTTCAACTAAAAGTATCTGCGTCGCTATTATTCTGTGCCTAAGTACTCTGCCCTCTCGCGCGGAGG
CCGGCGAATATTTCAACCCA

Product: putative chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MRYPFFAIGLLLSSSFAQASVVVGGTRLVFDGTKNNAVITVENKDQNSNIVQSWLSVVDAASPAKDAFIITPPLFRLKAG
EKGFVRVVRSGKKLPDDRESMFWLNIKGIPATEYVPDKNVVQFAINSKIKLIYRPAALKGNTPEAYAEKLQWGKEGTSVT
VKNNSPLYMNFSQVSLNGKNISGAWFAAPFSTLKIPVQSSLSATGKKEITWSVINDYGMSGKKYTAIIQ

Sequences:

>Translated_229_residues
MRYPFFAIGLLLSSSFAQASVVVGGTRLVFDGTKNNAVITVENKDQNSNIVQSWLSVVDAASPAKDAFIITPPLFRLKAG
EKGFVRVVRSGKKLPDDRESMFWLNIKGIPATEYVPDKNVVQFAINSKIKLIYRPAALKGNTPEAYAEKLQWGKEGTSVT
VKNNSPLYMNFSQVSLNGKNISGAWFAAPFSTLKIPVQSSLSATGKKEITWSVINDYGMSGKKYTAIIQ
>Mature_229_residues
MRYPFFAIGLLLSSSFAQASVVVGGTRLVFDGTKNNAVITVENKDQNSNIVQSWLSVVDAASPAKDAFIITPPLFRLKAG
EKGFVRVVRSGKKLPDDRESMFWLNIKGIPATEYVPDKNVVQFAINSKIKLIYRPAALKGNTPEAYAEKLQWGKEGTSVT
VKNNSPLYMNFSQVSLNGKNISGAWFAAPFSTLKIPVQSSLSATGKKEITWSVINDYGMSGKKYTAIIQ

Specific function: Required for the biogenesis of long polar fimbria; binds and interact with lpfA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789532, Length=233, Percent_Identity=33.0472103004292, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1790771, Length=224, Percent_Identity=33.0357142857143, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1786743, Length=209, Percent_Identity=29.1866028708134, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786333, Length=229, Percent_Identity=34.061135371179, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI87081806, Length=226, Percent_Identity=34.5132743362832, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786936, Length=217, Percent_Identity=30.8755760368664, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787171, Length=216, Percent_Identity=31.4814814814815, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788428, Length=210, Percent_Identity=27.6190476190476, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788677, Length=206, Percent_Identity=29.6116504854369, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082203, Length=205, Percent_Identity=25.8536585365854, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25090; Mature: 25090

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS00213 LIPOCALIN ; PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPFFAIGLLLSSSFAQASVVVGGTRLVFDGTKNNAVITVENKDQNSNIVQSWLSVVDA
CCCCHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHC
ASPAKDAFIITPPLFRLKAGEKGFVRVVRSGKKLPDDRESMFWLNIKGIPATEYVPDKNV
CCCCCCEEEECCCCEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCE
VQFAINSKIKLIYRPAALKGNTPEAYAEKLQWGKEGTSVTVKNNSPLYMNFSQVSLNGKN
EEEEECCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEEECCCC
ISGAWFAAPFSTLKIPVQSSLSATGKKEITWSVINDYGMSGKKYTAIIQ
CCCEEEECCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEC
>Mature Secondary Structure
MRYPFFAIGLLLSSSFAQASVVVGGTRLVFDGTKNNAVITVENKDQNSNIVQSWLSVVDA
CCCCHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHC
ASPAKDAFIITPPLFRLKAGEKGFVRVVRSGKKLPDDRESMFWLNIKGIPATEYVPDKNV
CCCCCCEEEECCCCEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCE
VQFAINSKIKLIYRPAALKGNTPEAYAEKLQWGKEGTSVTVKNNSPLYMNFSQVSLNGKN
EEEEECCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEEECCCC
ISGAWFAAPFSTLKIPVQSSLSATGKKEITWSVINDYGMSGKKYTAIIQ
CCCEEEECCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]