Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_012724 |
Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238028389
Identifier: 238028389
GI number: 238028389
Start: 3232602
End: 3234584
Strand: Direct
Name: 238028389
Synonym: bglu_1g28500
Alternate gene names: NA
Gene position: 3232602-3234584 (Clockwise)
Preceding gene: 238028380
Following gene: 238028390
Centisome position: 82.75
GC content: 59.71
Gene sequence:
>1983_bases ATGAGCCACTTTGACGAGCTACCGCGTCGTGACGGTAATCACGAGATCGAAGACGAGGCGATTGCCGCCTTCCAGATGCG GCTCACCGATAGTGGCGCTTTCATCCTTCAGGCGCAGGACCGCAAGGACTACGGAACGGACTGTCAGATCGAGGTGGTGG CTGATGGGCATGCCACCAACGCCCGGGTACACGTCCAGCTAAAGGGCACTGAGAGTGCGTTGAACGCTGACGGCTCGCTC AGTGTCGAAGTTCGCCGCACGAACCTCAACTATCTGCTTATGCAGCCCTATAGCGTTTACGTTGCCTATCACGCACCGAC AGGTTCCTTACGCATTCGCACGGCAGAAAGTGTTGCCCGTCAATATGAGCATAGCGGGAAAAACTGGACCGACCAGCGGT CGCTGACTGTCTCTTTCGTTGAGGAGCTGTCGATTGAGCGCCTTGGCCGGCTCGCGGCTCTTGCCCGTGCCGGGGCAAAG TCATCACGCGATCGGCGCGTAGGCCAAGTCGGGGTGGCCGCCGCCGACCTATCCAATCACGTTCTGGGGTCGCCGCGTGA TATTCACGTTCCCCAGGAGACTGCCCTGGCGCGCGAGCTTCTCGTACAACTCTACGAGAAGAACGCCGACGAGGAGATTA GCGCCGGCTTCGCCAAGTTCGCGGCCGTTTTCGGCGTTGGCAGTGACGAAATGGGCGTTTGCTACATGGCCGAAATCAAC CTCGGCATGGATGGCATGAGCCGGCACCCAGAGAGGATCGAGGAAGCCATCAGTTTTTTTCGGATCAGGCTTGCAGATGA TCGTTATCAAATCGGCGACCTGCACTACACGATCGGAAACGCCTTCCATGCTCTCGGTAACGAGCAAGAAGCAAAGCGAG CTTTCGAAGCCGCGCTCGCCGATCCTGCGCTCGCTGCCACTTCCGAACTAGCAGCTCAGATCCACAAAAACCTCGGCTCC AGTTGCGCCGTGCTTGGCGACGACGGGCAGGCGGTGGCTCACTACCGCGAAGCTTTGCGGTTGAATCCCGATCTTGCGGA GGCCCACAACTCCCTGGGCACCCACTACGTTCGTTTGGGCAAGTACGAGGACGCTTTGCGTCATCTCGACCAAGTCGTCT TCTCGGATCAAAAGCAGGGCAGGACTTCTGCGGTCGTCGGCTGGCGCGTCAACGTTCTTTTCAATCTCGGCGACGGCCGT GCTGCGTTTCGCGAGATCAACGGCCTGGTAGCTCAGGCTGACCGCTTCCGTTGGATTTGGCCGTGGTGTTCCCGTCTGGT CACGGCCTTCGGACGCGCGAATGTGGACAACGCCCGTCAGGCGTTGCCCTTCTGGCAACGCTACGTGAGGGCGAACCCTG AGGATCCCGCCGGAAATTGGGAACTTCTCATGACGACGTTCTATCTGCGCGGCCGAGGAGAGGATGTCTCGAAAACCTAT AGTGAATTCCGCGAGGAATTCGATAGGCACATCGCCCACATCGACCCCGACGATGCCGCGCTGCCTTGGGATCGTCTGGG CCACTGGGCGCAGGACGACCAAGACTGGGCGGAGGCGGAGCGCTGCTTTCGCAAGGCGTATGAATTGGCGGGCGGCGAAT ACGGCTATTGCATGGCGATTGCCCTCATGGAATTGGGGAGGTTCGATGAGAGCGTGCCGCTCCTGCTGGAACAGGCTCAG ACCATTCAACCGGATGCCAAGAGCTGGTTTCAGCTGGCTGCAGCTTACGCCTCCCTTAGCAGGTGGTCAGAGGCGATTGA CGCCTACGAGAGGACGCTTGGGCTCGACCCAGACGATGCTGTGGCGATGTTCGACCTTGGCGGCGCCCACTGGAATAGTG GCGATGCAGCGACGGCGCTGGACATTTGGACGGCTGCGATAGAACGTTTCCCTACCCATGAACTCAGCGCCAAGCTTGAG CGCGATTTCCCGTCGTTGTTTAGTGATCCGGATACCGGCCAACCCGCCGATGGCACTCGGTAG
Upstream 100 bases:
>100_bases GAAAGTCTTGGTGGCGCCAACGCTCAAGTTCGTGCGGTCGACGTCGTAGGTATCGTCTATAGCAACCGGAACCACCGAAC GCCCGCATCAAGCCAACGCT
Downstream 100 bases:
>100_bases AGGTTCGGGTCTGTCCCAGCGACCGACCGGAAGGCAATCGGCCACCAATCAAATGCGCCTGTCCAAAACCGATCCCTTGC GGACAGGGGCATTTTGCCCT
Product: TPR domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 660; Mature: 659
Protein sequence:
>660_residues MSHFDELPRRDGNHEIEDEAIAAFQMRLTDSGAFILQAQDRKDYGTDCQIEVVADGHATNARVHVQLKGTESALNADGSL SVEVRRTNLNYLLMQPYSVYVAYHAPTGSLRIRTAESVARQYEHSGKNWTDQRSLTVSFVEELSIERLGRLAALARAGAK SSRDRRVGQVGVAAADLSNHVLGSPRDIHVPQETALARELLVQLYEKNADEEISAGFAKFAAVFGVGSDEMGVCYMAEIN LGMDGMSRHPERIEEAISFFRIRLADDRYQIGDLHYTIGNAFHALGNEQEAKRAFEAALADPALAATSELAAQIHKNLGS SCAVLGDDGQAVAHYREALRLNPDLAEAHNSLGTHYVRLGKYEDALRHLDQVVFSDQKQGRTSAVVGWRVNVLFNLGDGR AAFREINGLVAQADRFRWIWPWCSRLVTAFGRANVDNARQALPFWQRYVRANPEDPAGNWELLMTTFYLRGRGEDVSKTY SEFREEFDRHIAHIDPDDAALPWDRLGHWAQDDQDWAEAERCFRKAYELAGGEYGYCMAIALMELGRFDESVPLLLEQAQ TIQPDAKSWFQLAAAYASLSRWSEAIDAYERTLGLDPDDAVAMFDLGGAHWNSGDAATALDIWTAAIERFPTHELSAKLE RDFPSLFSDPDTGQPADGTR
Sequences:
>Translated_660_residues MSHFDELPRRDGNHEIEDEAIAAFQMRLTDSGAFILQAQDRKDYGTDCQIEVVADGHATNARVHVQLKGTESALNADGSL SVEVRRTNLNYLLMQPYSVYVAYHAPTGSLRIRTAESVARQYEHSGKNWTDQRSLTVSFVEELSIERLGRLAALARAGAK SSRDRRVGQVGVAAADLSNHVLGSPRDIHVPQETALARELLVQLYEKNADEEISAGFAKFAAVFGVGSDEMGVCYMAEIN LGMDGMSRHPERIEEAISFFRIRLADDRYQIGDLHYTIGNAFHALGNEQEAKRAFEAALADPALAATSELAAQIHKNLGS SCAVLGDDGQAVAHYREALRLNPDLAEAHNSLGTHYVRLGKYEDALRHLDQVVFSDQKQGRTSAVVGWRVNVLFNLGDGR AAFREINGLVAQADRFRWIWPWCSRLVTAFGRANVDNARQALPFWQRYVRANPEDPAGNWELLMTTFYLRGRGEDVSKTY SEFREEFDRHIAHIDPDDAALPWDRLGHWAQDDQDWAEAERCFRKAYELAGGEYGYCMAIALMELGRFDESVPLLLEQAQ TIQPDAKSWFQLAAAYASLSRWSEAIDAYERTLGLDPDDAVAMFDLGGAHWNSGDAATALDIWTAAIERFPTHELSAKLE RDFPSLFSDPDTGQPADGTR >Mature_659_residues SHFDELPRRDGNHEIEDEAIAAFQMRLTDSGAFILQAQDRKDYGTDCQIEVVADGHATNARVHVQLKGTESALNADGSLS VEVRRTNLNYLLMQPYSVYVAYHAPTGSLRIRTAESVARQYEHSGKNWTDQRSLTVSFVEELSIERLGRLAALARAGAKS SRDRRVGQVGVAAADLSNHVLGSPRDIHVPQETALARELLVQLYEKNADEEISAGFAKFAAVFGVGSDEMGVCYMAEINL GMDGMSRHPERIEEAISFFRIRLADDRYQIGDLHYTIGNAFHALGNEQEAKRAFEAALADPALAATSELAAQIHKNLGSS CAVLGDDGQAVAHYREALRLNPDLAEAHNSLGTHYVRLGKYEDALRHLDQVVFSDQKQGRTSAVVGWRVNVLFNLGDGRA AFREINGLVAQADRFRWIWPWCSRLVTAFGRANVDNARQALPFWQRYVRANPEDPAGNWELLMTTFYLRGRGEDVSKTYS EFREEFDRHIAHIDPDDAALPWDRLGHWAQDDQDWAEAERCFRKAYELAGGEYGYCMAIALMELGRFDESVPLLLEQAQT IQPDAKSWFQLAAAYASLSRWSEAIDAYERTLGLDPDDAVAMFDLGGAHWNSGDAATALDIWTAAIERFPTHELSAKLER DFPSLFSDPDTGQPADGTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73575; Mature: 73444
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHFDELPRRDGNHEIEDEAIAAFQMRLTDSGAFILQAQDRKDYGTDCQIEVVADGHATN CCCHHHCCCCCCCCCCCHHHHHHHHEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCC ARVHVQLKGTESALNADGSLSVEVRRTNLNYLLMQPYSVYVAYHAPTGSLRIRTAESVAR CEEEEEEECCHHHCCCCCCEEEEEEECCCCEEEECCEEEEEEEECCCCCEEEEEHHHHHH QYEHSGKNWTDQRSLTVSFVEELSIERLGRLAALARAGAKSSRDRRVGQVGVAAADLSNH HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCEEHHHHHHC VLGSPRDIHVPQETALARELLVQLYEKNADEEISAGFAKFAAVFGVGSDEMGVCYMAEIN CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC LGMDGMSRHPERIEEAISFFRIRLADDRYQIGDLHYTIGNAFHALGNEQEAKRAFEAALA CCCCCCCCCHHHHHHHHHHHEEEECCCCEEECCEEEHHHHHHHHCCCHHHHHHHHHHHHC DPALAATSELAAQIHKNLGSSCAVLGDDGQAVAHYREALRLNPDLAEAHNSLGTHYVRLG CCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEC KYEDALRHLDQVVFSDQKQGRTSAVVGWRVNVLFNLGDGRAAFREINGLVAQADRFRWIW CHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEH PWCSRLVTAFGRANVDNARQALPFWQRYVRANPEDPAGNWELLMTTFYLRGRGEDVSKTY HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHEECCCCCHHHHHH SEFREEFDRHIAHIDPDDAALPWDRLGHWAQDDQDWAEAERCFRKAYELAGGEYGYCMAI HHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH ALMELGRFDESVPLLLEQAQTIQPDAKSWFQLAAAYASLSRWSEAIDAYERTLGLDPDDA HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC VAMFDLGGAHWNSGDAATALDIWTAAIERFPTHELSAKLERDFPSLFSDPDTGQPADGTR EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCC >Mature Secondary Structure SHFDELPRRDGNHEIEDEAIAAFQMRLTDSGAFILQAQDRKDYGTDCQIEVVADGHATN CCHHHCCCCCCCCCCCHHHHHHHHEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCC ARVHVQLKGTESALNADGSLSVEVRRTNLNYLLMQPYSVYVAYHAPTGSLRIRTAESVAR CEEEEEEECCHHHCCCCCCEEEEEEECCCCEEEECCEEEEEEEECCCCCEEEEEHHHHHH QYEHSGKNWTDQRSLTVSFVEELSIERLGRLAALARAGAKSSRDRRVGQVGVAAADLSNH HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCEEHHHHHHC VLGSPRDIHVPQETALARELLVQLYEKNADEEISAGFAKFAAVFGVGSDEMGVCYMAEIN CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC LGMDGMSRHPERIEEAISFFRIRLADDRYQIGDLHYTIGNAFHALGNEQEAKRAFEAALA CCCCCCCCCHHHHHHHHHHHEEEECCCCEEECCEEEHHHHHHHHCCCHHHHHHHHHHHHC DPALAATSELAAQIHKNLGSSCAVLGDDGQAVAHYREALRLNPDLAEAHNSLGTHYVRLG CCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEC KYEDALRHLDQVVFSDQKQGRTSAVVGWRVNVLFNLGDGRAAFREINGLVAQADRFRWIW CHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEH PWCSRLVTAFGRANVDNARQALPFWQRYVRANPEDPAGNWELLMTTFYLRGRGEDVSKTY HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHEECCCCCHHHHHH SEFREEFDRHIAHIDPDDAALPWDRLGHWAQDDQDWAEAERCFRKAYELAGGEYGYCMAI HHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH ALMELGRFDESVPLLLEQAQTIQPDAKSWFQLAAAYASLSRWSEAIDAYERTLGLDPDDA HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC VAMFDLGGAHWNSGDAATALDIWTAAIERFPTHELSAKLERDFPSLFSDPDTGQPADGTR EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA