Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is lptG [H]
Identifier: 238028371
GI number: 238028371
Start: 3213029
End: 3214177
Strand: Direct
Name: lptG [H]
Synonym: bglu_1g28320
Alternate gene names: 238028371
Gene position: 3213029-3214177 (Clockwise)
Preceding gene: 238028370
Following gene: 238028372
Centisome position: 82.25
GC content: 64.32
Gene sequence:
>1149_bases ATGCGGCTCTACGAAAAGTATTTCGCGCGCCAGATCTACCTGACGTTCATCTTCGTGCTGTTCGCGTTCTCGGGGCTGTT CTTCTTCTTCGACCTGATCAGCGAGCTGAACTCGGTCGGCCACGGCGCCTACAACTTCGGCTACGCGGTGCTGCGCGTCG CGCTGCAGACGCCCTCGCGCTTCTACGAGATCATCCCGGTCGCGACGCTGATCAGCGCGATCTACGTGTTCGCGCAGATG GCAGCGAACTCCGAGTTCACGATCTTCCGCGTCTCGGGCCTCGCCACCAACCAGGCGCTGCGCTCGCTGCTGAAGATCGG CGTGCCGCTCGTGATCGTCACCTACCTGATCGGCGAATTCATCGGCCCCTACACCGATCAGCTCTCCGAGCGCGTGCGGC TCGAGGCGCTCGGCTCGTCGGTGTCGTCGAACTTCGCCTCGGGCGTCTGGGTCAAGGACACGCTGACCGCGCGCGACAAC GGCGAGCCGGTCACGCGCTTCGTCAACGTCGGCACGCTGTCGCCCGATTCGACCATCAGCAACGTGCGGATCTACGAGTT CGATTCGAAGTTCCAGCTGCAGAACGTGCGGATCGCGAAGTCGGGCCGCTACGCGCCGCCCGGCCACTGGCTGCTGACCG ACGTGACCGACACCCAGCTCACGCCGATCCCGCCGGACAGCCATGCGCCGAAGGATGCGCTGAACCCGGTCTACCGCTCC GAGCAGGTGTCGATGCCGCAGTATTCGCTGCGCTCGGATCTCACGCCGCAGATCCTGTCGGTGCTGCTGGTGTCGCCGGA GCGGATGTCGATCTTCAACCTGTTCCGCTATATTCAGCATTTGCGCGAGAACCAGCAGGACACCCAGACCTACGACATCG CGCTGTGGCGCAAGCTGCTGTACCCGTTCGCGGTGTTCGTGATGCTGGTGCTGTCGCTGCCGTTCGCGTACCTGCATACG CGCGCCGGGGTGGTGGGCGTGAAGGTGTTCGGCGGCATCATGCTCGGCATGAGCTTCCAGCTCTTCAACACGCTGTTCTC GCACATCGGCACGCTCAATACCTGGCCCGCGCCGCTCACGGCGGCGCTTCCCGCCCTGATCTACCTCGCGCTCGGCCTGT TCGCGCTGAAGTGGGTCGACCGGCACTGA
Upstream 100 bases:
>100_bases GCACCTGGTGGTGGCCGGCATCGTCGCGTTCCTGTTCTGGCTACGCGTGCGCAACCGGCCGCTCATCTCGCGGGCCACGT TCCGCCGGGGAGCCTGACCG
Downstream 100 bases:
>100_bases TCACCGATTACCGCAGAGAACGGAGGAACGATGAGCAAGCATGGGATCATCCTATTCGGACATGGTTCGCGCGACCCGCG CTGGATGGAGCCCTTCGAGC
Product: permease YjgP/YjgQ family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MRLYEKYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGHGAYNFGYAVLRVALQTPSRFYEIIPVATLISAIYVFAQM AANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFIGPYTDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDN GEPVTRFVNVGTLSPDSTISNVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYRS EQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRENQQDTQTYDIALWRKLLYPFAVFVMLVLSLPFAYLHT RAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTAALPALIYLALGLFALKWVDRH
Sequences:
>Translated_382_residues MRLYEKYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGHGAYNFGYAVLRVALQTPSRFYEIIPVATLISAIYVFAQM AANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFIGPYTDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDN GEPVTRFVNVGTLSPDSTISNVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYRS EQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRENQQDTQTYDIALWRKLLYPFAVFVMLVLSLPFAYLHT RAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTAALPALIYLALGLFALKWVDRH >Mature_382_residues MRLYEKYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGHGAYNFGYAVLRVALQTPSRFYEIIPVATLISAIYVFAQM AANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFIGPYTDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDN GEPVTRFVNVGTLSPDSTISNVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYRS EQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRENQQDTQTYDIALWRKLLYPFAVFVMLVLSLPFAYLHT RAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTAALPALIYLALGLFALKWVDRH
Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptF/lptG family [H]
Homologues:
Organism=Escherichia coli, GI87082400, Length=375, Percent_Identity=27.2, Blast_Score=146, Evalue=2e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005495 [H]
Pfam domain/function: PF03739 YjgP_YjgQ [H]
EC number: NA
Molecular weight: Translated: 43045; Mature: 43045
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLYEKYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGHGAYNFGYAVLRVALQTPSR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH FYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHH IGPYTDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS HCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHEEECCCCCCCCCCC NVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYRS CEEEEEECCCEEECCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCHHHCC EQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRENQQDTQTYDIALWRKLL CCCCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH YPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLT HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH AALPALIYLALGLFALKWVDRH HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRLYEKYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGHGAYNFGYAVLRVALQTPSR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH FYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHH IGPYTDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS HCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHEEECCCCCCCCCCC NVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYRS CEEEEEECCCEEECCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCHHHCC EQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRENQQDTQTYDIALWRKLL CCCCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH YPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLT HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH AALPALIYLALGLFALKWVDRH HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]