Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is tal [H]
Identifier: 238028224
GI number: 238028224
Start: 3048377
End: 3049330
Strand: Direct
Name: tal [H]
Synonym: bglu_1g26770
Alternate gene names: 238028224
Gene position: 3048377-3049330 (Clockwise)
Preceding gene: 238028223
Following gene: 238028225
Centisome position: 78.03
GC content: 66.77
Gene sequence:
>954_bases ATGACTACCGCACTCGACCAGCTGAAGCAGTACACGACCGTCGTCGCCGATACCGGCGATTTCCAGCAGCTCGCGCAATA CCAGCCGCAGGACGCGACCACCAACCCTTCGCTGATTCTGAAGGCGGTCCAGAAGGATGCCTACAAGCCGCTCCTCGAGA AGACCGTGCGCGACCACGCGGGCGAGCCCACCGGCGTGATCATCGACCGCCTGCTGATCGCGTTCGGCACCGAAATCCTC AAGCTGATCCCGGGCCGCGTCTCGACCGAGGTGGACGCGCGCCTGTCGTTCGACGCACCGGCCTCGATCGACAAGGGCCG CGAGCTGATCCGCCTCTACGAAGCCGCCGGCATCGGCCGCGAGCGCGTGCTGATCAAGCTCGCCTCGACCTGGGAAGGCG TGCGCGCCGCCGAGGTGCTGCAGAAGGAAGGCATCAAGTGCAACATGACGCTGCTGTTCTCGCTGGTCCAGGCCGCCGCC TGCGCCGAAGCGGGCGCGCAGCTGATCTCGCCGTTCGTCGGCCGGATCTACGACTGGTACAAGAAGCAGGCCGGCGCCGG CTGGGACGAGGCGAAGAACGGCGGCGCGAACGATCCGGGCGTGCAGTCGGTGCGCCGCATCTACGCCTACTACAAGAAGT TCGGCTACAAGACCGAGGTGATGGGCGCGAGCTTCCGCACCACCGGCCAGATCGTCGAACTCGCCGGCTGCGACCTGCTG ACGATCAGTCCCGACCTGCTGCAGAAGCTGCACGAAAGCAACGACAAGGTCGAGCGCAAGCTGTCGGCCGATCGCACCGG CGACGCGCCGGCCGATCGCGTGGCGATCGACGAGTCCTCGTTCCGCTTCCAGCTCAACGACGACGCGATGGCCACCGAGA AGCTCGCCGAAGGCATCCGCGCGTTCGCCGCCGACGCGGTGAAGCTCGAGGGCCTGATCGAAGCGCTGCGCTGA
Upstream 100 bases:
>100_bases GCCGGGCCCGCGCGGCCCGGCCGGCCCGCTTCGCCGCCGCGCGCCCCGCCGCGCGGCCTTCCGTCGAACCCGGCGCGCTG CGCCCATCCAACGATTCGCC
Downstream 100 bases:
>100_bases TCGACGCGCGCGGCAGCGCGCGGCAGCGCGCTTGCAGCCCGCTTGCTGACCGCTTGCTGACCGCTTGCTGGCCGCTTGCT GGCCGCTTGCTGGCCGCGCC
Product: transaldolase B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MTTALDQLKQYTTVVADTGDFQQLAQYQPQDATTNPSLILKAVQKDAYKPLLEKTVRDHAGEPTGVIIDRLLIAFGTEIL KLIPGRVSTEVDARLSFDAPASIDKGRELIRLYEAAGIGRERVLIKLASTWEGVRAAEVLQKEGIKCNMTLLFSLVQAAA CAEAGAQLISPFVGRIYDWYKKQAGAGWDEAKNGGANDPGVQSVRRIYAYYKKFGYKTEVMGASFRTTGQIVELAGCDLL TISPDLLQKLHESNDKVERKLSADRTGDAPADRVAIDESSFRFQLNDDAMATEKLAEGIRAFAADAVKLEGLIEALR
Sequences:
>Translated_317_residues MTTALDQLKQYTTVVADTGDFQQLAQYQPQDATTNPSLILKAVQKDAYKPLLEKTVRDHAGEPTGVIIDRLLIAFGTEIL KLIPGRVSTEVDARLSFDAPASIDKGRELIRLYEAAGIGRERVLIKLASTWEGVRAAEVLQKEGIKCNMTLLFSLVQAAA CAEAGAQLISPFVGRIYDWYKKQAGAGWDEAKNGGANDPGVQSVRRIYAYYKKFGYKTEVMGASFRTTGQIVELAGCDLL TISPDLLQKLHESNDKVERKLSADRTGDAPADRVAIDESSFRFQLNDDAMATEKLAEGIRAFAADAVKLEGLIEALR >Mature_316_residues TTALDQLKQYTTVVADTGDFQQLAQYQPQDATTNPSLILKAVQKDAYKPLLEKTVRDHAGEPTGVIIDRLLIAFGTEILK LIPGRVSTEVDARLSFDAPASIDKGRELIRLYEAAGIGRERVLIKLASTWEGVRAAEVLQKEGIKCNMTLLFSLVQAAAC AEAGAQLISPFVGRIYDWYKKQAGAGWDEAKNGGANDPGVQSVRRIYAYYKKFGYKTEVMGASFRTTGQIVELAGCDLLT ISPDLLQKLHESNDKVERKLSADRTGDAPADRVAIDESSFRFQLNDDAMATEKLAEGIRAFAADAVKLEGLIEALR
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway [H]
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI5803187, Length=320, Percent_Identity=57.8125, Blast_Score=353, Evalue=8e-98, Organism=Escherichia coli, GI1786189, Length=319, Percent_Identity=58.307210031348, Blast_Score=349, Evalue=1e-97, Organism=Escherichia coli, GI1788807, Length=318, Percent_Identity=55.6603773584906, Blast_Score=329, Evalue=1e-91, Organism=Caenorhabditis elegans, GI25153750, Length=320, Percent_Identity=56.25, Blast_Score=341, Evalue=3e-94, Organism=Caenorhabditis elegans, GI25153752, Length=167, Percent_Identity=56.2874251497006, Blast_Score=179, Evalue=2e-45, Organism=Caenorhabditis elegans, GI17570473, Length=97, Percent_Identity=58.7628865979381, Blast_Score=98, Evalue=7e-21, Organism=Saccharomyces cerevisiae, GI6321480, Length=323, Percent_Identity=51.0835913312694, Blast_Score=323, Evalue=2e-89, Organism=Saccharomyces cerevisiae, GI6323386, Length=323, Percent_Identity=56.656346749226, Blast_Score=317, Evalue=1e-87, Organism=Drosophila melanogaster, GI45549185, Length=319, Percent_Identity=56.4263322884012, Blast_Score=358, Evalue=3e-99,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004730 - InterPro: IPR018225 [H]
Pfam domain/function: PF00923 Transaldolase [H]
EC number: =2.2.1.2 [H]
Molecular weight: Translated: 34704; Mature: 34573
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS01054 TRANSALDOLASE_1 ; PS00958 TRANSALDOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTALDQLKQYTTVVADTGDFQQLAQYQPQDATTNPSLILKAVQKDAYKPLLEKTVRDHA CCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GEPTGVIIDRLLIAFGTEILKLIPGRVSTEVDARLSFDAPASIDKGRELIRLYEAAGIGR CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCH ERVLIKLASTWEGVRAAEVLQKEGIKCNMTLLFSLVQAAACAEAGAQLISPFVGRIYDWY HHHHEEEHHHHCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKQAGAGWDEAKNGGANDPGVQSVRRIYAYYKKFGYKTEVMGASFRTTGQIVELAGCDLL HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHCCCCEE TISPDLLQKLHESNDKVERKLSADRTGDAPADRVAIDESSFRFQLNDDAMATEKLAEGIR EECHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHH AFAADAVKLEGLIEALR HHHHHHHHHHHHHHHHC >Mature Secondary Structure TTALDQLKQYTTVVADTGDFQQLAQYQPQDATTNPSLILKAVQKDAYKPLLEKTVRDHA CHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GEPTGVIIDRLLIAFGTEILKLIPGRVSTEVDARLSFDAPASIDKGRELIRLYEAAGIGR CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCH ERVLIKLASTWEGVRAAEVLQKEGIKCNMTLLFSLVQAAACAEAGAQLISPFVGRIYDWY HHHHEEEHHHHCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKQAGAGWDEAKNGGANDPGVQSVRRIYAYYKKFGYKTEVMGASFRTTGQIVELAGCDLL HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHCCCCEE TISPDLLQKLHESNDKVERKLSADRTGDAPADRVAIDESSFRFQLNDDAMATEKLAEGIR EECHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHH AFAADAVKLEGLIEALR HHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA