Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238028194
Identifier: 238028194
GI number: 238028194
Start: 3009877
End: 3011178
Strand: Direct
Name: 238028194
Synonym: bglu_1g26460
Alternate gene names: NA
Gene position: 3009877-3011178 (Clockwise)
Preceding gene: 238028193
Following gene: 238028195
Centisome position: 77.05
GC content: 71.81
Gene sequence:
>1302_bases ATGACGGGAACCAATACGGTCAGCACCCGCAGCCTGCGCGCCCTCGACTGGGTCAACTTCTTCGTCGCGAACGTGCAGAC GGGCTTCGGCCCCTTCATCGCCTCCTATCTCGCCTCGCACAAGTGGACGCAGGGCGAGATCGGCCTGGTGCTGTCGATCG GCACCATCAGCGCGATGGTCAGCCAGGTGCCGGGCGGTGCCGCCGTCGACGCGCTGAAGAACAAGAAGGGCGCCGCGGCC TGGGCGATCATGGCGATCATCCTGTCGGCGGTGCTGCTCGCCGCCAGCCCGACCATCGTGCCGGTGATCGCGGCCGAGGT GTTCCACGGCTTCGCGAGCTGCATGCTGGTGCCCGCGATGGCGGCGATCTCGTTCTCGCTGGTGGGCCGCGCGAACCTTG GCGACCGGCTCGGCCGCAACGCGCGCTGGGCCTCGATCGGCAGCGCGGTGGCCGCGGGCCTGATGGGGCTGACGGGCGAA TACGTGTCGGCGCGCGCGGTGTTCTGGTTGACGGCCGCGCTCGCGCTGCCGGCGCTGGTCGCGCTCTCGATGATCCAGCC GACCCACACGGTCGCGCCGCCGCCGGGCAACCGCCCGCGCGAGGCGAGCGCCGACGGCGAGCCGCGAGAGACGATCCTCG ATCTGCTGCGCGACCGGCGCATGCTGGTGTTCGCCGCCTGCGTGGTGCTGTTCCACCTGTCGAATGCGGCGATGCTGAAC CTCGCGGCCGGCGAAGTGACGGCTGGCATGGGCGACAACGTGCAGCTCGTGATCGCGGCCTGCATCATCGTCCCGCAGGC GATCGTGGCGATGCTCTCGCCCTGGGTGGGCCGCTCCGCGCAGCGCTGGGGGCGCCGGCCGATCCTGCTGCTCGGCTTCT CGGCGCTGCCGGTACGCGCGCTGCTGTTCGCGGGCGTCAGCAGCCCGTACCTGCTGGTGCCGGTGCAGATGCTCGACGGC ATCAGTGCGGCCGTGTTCGGCGTGATGCTGCCGCTGATCGCCGCCGACGTGGCGGGCGGCAAGGGCCGCTACAACCTCTG CATCGGCCTGTTCGGGCTCGCGGCCGGCATCGGCGCGACGCTGAGCACCTCGCTCGCCGGCTTCGCGGCCGACCATTTCG GCAACACCATGAGCTTCTTCGGACTCGCGGCGGCAGGCGCGCTCGCCGTGCTGCTGGTGGCACTGGCGATGCCGGAGACG CGCGACGCCGGGCTCGGTGAGAACCAGCCGGACACCCCGCCCGACGCGCCCGATTCGGCTGGCTCCAGCGACGCTGCCGG CAAGCCGCCGCGGGCCGCCTGA
Upstream 100 bases:
>100_bases CCGAGGCGCAGCTGAAGGCGGCGCCGCCCTATGCGGCCGACAAACCGGTGATCGCCGTGTCGCCGCCGGCGAGCCAGGCG TCCAGCGCGGGAACCAGCCG
Downstream 100 bases:
>100_bases CGCGACGCACGATGGACCCGATCCGCACGCTCGACGACACGCGCCGCGACATCCAGCAATCGCTGCTCGCGCTGTTCAAG GGCATGTCGCTGCGCGAGCG
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MTGTNTVSTRSLRALDWVNFFVANVQTGFGPFIASYLASHKWTQGEIGLVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIMAIILSAVLLAASPTIVPVIAAEVFHGFASCMLVPAMAAISFSLVGRANLGDRLGRNARWASIGSAVAAGLMGLTGE YVSARAVFWLTAALALPALVALSMIQPTHTVAPPPGNRPREASADGEPRETILDLLRDRRMLVFAACVVLFHLSNAAMLN LAAGEVTAGMGDNVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRALLFAGVSSPYLLVPVQMLDG ISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLSTSLAGFAADHFGNTMSFFGLAAAGALAVLLVALAMPET RDAGLGENQPDTPPDAPDSAGSSDAAGKPPRAA
Sequences:
>Translated_433_residues MTGTNTVSTRSLRALDWVNFFVANVQTGFGPFIASYLASHKWTQGEIGLVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIMAIILSAVLLAASPTIVPVIAAEVFHGFASCMLVPAMAAISFSLVGRANLGDRLGRNARWASIGSAVAAGLMGLTGE YVSARAVFWLTAALALPALVALSMIQPTHTVAPPPGNRPREASADGEPRETILDLLRDRRMLVFAACVVLFHLSNAAMLN LAAGEVTAGMGDNVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRALLFAGVSSPYLLVPVQMLDG ISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLSTSLAGFAADHFGNTMSFFGLAAAGALAVLLVALAMPET RDAGLGENQPDTPPDAPDSAGSSDAAGKPPRAA >Mature_432_residues TGTNTVSTRSLRALDWVNFFVANVQTGFGPFIASYLASHKWTQGEIGLVLSIGTISAMVSQVPGGAAVDALKNKKGAAAW AIMAIILSAVLLAASPTIVPVIAAEVFHGFASCMLVPAMAAISFSLVGRANLGDRLGRNARWASIGSAVAAGLMGLTGEY VSARAVFWLTAALALPALVALSMIQPTHTVAPPPGNRPREASADGEPRETILDLLRDRRMLVFAACVVLFHLSNAAMLNL AAGEVTAGMGDNVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRALLFAGVSSPYLLVPVQMLDGI SAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLSTSLAGFAADHFGNTMSFFGLAAAGALAVLLVALAMPETR DAGLGENQPDTPPDAPDSAGSSDAAGKPPRAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 44361; Mature: 44230
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTNTVSTRSLRALDWVNFFVANVQTGFGPFIASYLASHKWTQGEIGLVLSIGTISAMV CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIMAIILSAVLLAASPTIVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFSLVGRANLGDRLGRNARWASIGSAVAAGLMGLTGEYVSARAVFWLTAALALPALV HHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALSMIQPTHTVAPPPGNRPREASADGEPRETILDLLRDRRMLVFAACVVLFHLSNAAMLN HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEE LAAGEVTAGMGDNVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRA EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEECCCHHHHHH LLFAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGAT HHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH LSTSLAGFAADHFGNTMSFFGLAAAGALAVLLVALAMPETRDAGLGENQPDTPPDAPDSA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC GSSDAAGKPPRAA CCCCCCCCCCCCC >Mature Secondary Structure TGTNTVSTRSLRALDWVNFFVANVQTGFGPFIASYLASHKWTQGEIGLVLSIGTISAMV CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIMAIILSAVLLAASPTIVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFSLVGRANLGDRLGRNARWASIGSAVAAGLMGLTGEYVSARAVFWLTAALALPALV HHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALSMIQPTHTVAPPPGNRPREASADGEPRETILDLLRDRRMLVFAACVVLFHLSNAAMLN HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEE LAAGEVTAGMGDNVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRA EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEECCCHHHHHH LLFAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGAT HHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH LSTSLAGFAADHFGNTMSFFGLAAAGALAVLLVALAMPETRDAGLGENQPDTPPDAPDSA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC GSSDAAGKPPRAA CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]