Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is yulF [H]
Identifier: 238027539
GI number: 238027539
Start: 2136739
End: 2137740
Strand: Reverse
Name: yulF [H]
Synonym: bglu_1g19570
Alternate gene names: 238027539
Gene position: 2137740-2136739 (Counterclockwise)
Preceding gene: 238027540
Following gene: 238027532
Centisome position: 54.72
GC content: 72.36
Gene sequence:
>1002_bases ATGACCCTTCCTTCCTCCCAGCCGATCCGTTTCGGCATCGTCGGCGCCGGCGCGATCGCGCGCCGCTTCGCGCAATCGCT GGGCCACGTGCCGGATGCCGTGCTCGCGCAGGTCTGGGCGCGCCGCCCGGAGGCCGCCGCCGCGTTCTGCGCCGAGCTAG GCGGCACGCCCGCAGCGAGCTTCGAGGCGCTGTGCGCATCCGATCTGGATGCGATCTACATCGCCACCCTGAACGACAGC CACGCCCGTTATGCGATCGCCGCGCTCGCGGCCGGCAAGGCCGTGCTCTGCGAGAAGCCGGCCACCGTCAATGCGCGCGA ACTCGAGGCCGTGCTGGCCGCCGCCGCGGCGGCCCGGAGGCTGTTCATGGAGGCCATGAAGCCGCCGTTCTATCCGCTCT ACCGGCGCCTGCGCGAGCATCTGGCGCGCGACCCGATCGGCGCGGTCCGGCTGGTGCGGGCGGGCGGTGCGTTCTCGACG GTGCCGGCCGATCATCCGAGCTTCAGCGCCGCGGCGGCGGGCGGCGCGCTGCTCGACATCGGCATCTACGAGCTGTTTCT CGCCGTCGACTGGCTCGGCGAGGCGCACGAGGTGCAGACGCTCGGCCGGGTCGGCGCGAGCGGCGTGGACGTGTTCGCCA GCCTGAACAGCCGTCACGCCGAAGGCGGCATTGCGCAGCTGTTCTGCGGGCTCGACGTGATGGGGCGCGGCGACGCGCTG CTCGGCGCGGCGGGCGGGACCGTGACGATCCACGAGAACTGGTGGAATCCGGCCAAGGCGACGATCCGTTACGCGGACGG CCGCGTCGTCGAGCTGGACGCGCCGTTTTCGGGCGGCGGCCTCAACTACGAGACCGAGCATTTCTGCGCGCTGCTGCGCG AAGGGCGGCTCGAGAGTCCGGTGATGACGCACGCGCATTCGCGCCACATGATCGCGCTGTGCGATGCGGCGCGCGCGGCG CTCGGCGTGAGGTTCGCGGCGGACGACGCGAGCGCGGGCTGA
Upstream 100 bases:
>100_bases TGCACGCGCTAGCCGGCGGGACATCGACCCGCGCCGGCCGTTATCATGACGGCCGGCCGCCGGCTTGGCCGGCGCGGTTT CCCGCCCCACTTCGATCCCG
Downstream 100 bases:
>100_bases GGGCCGGACGCCCAGCGCGACGCGCTCGGGCATCGCCGGAGGGCGCGTGGGCCTCGCGTCGGCGCGCGGGCCCGGCCCGC AGCCGGGCGCCGGCCGGCCT
Product: Gfo/Idh/MocA family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MTLPSSQPIRFGIVGAGAIARRFAQSLGHVPDAVLAQVWARRPEAAAAFCAELGGTPAASFEALCASDLDAIYIATLNDS HARYAIAALAAGKAVLCEKPATVNARELEAVLAAAAAARRLFMEAMKPPFYPLYRRLREHLARDPIGAVRLVRAGGAFST VPADHPSFSAAAAGGALLDIGIYELFLAVDWLGEAHEVQTLGRVGASGVDVFASLNSRHAEGGIAQLFCGLDVMGRGDAL LGAAGGTVTIHENWWNPAKATIRYADGRVVELDAPFSGGGLNYETEHFCALLREGRLESPVMTHAHSRHMIALCDAARAA LGVRFAADDASAG
Sequences:
>Translated_333_residues MTLPSSQPIRFGIVGAGAIARRFAQSLGHVPDAVLAQVWARRPEAAAAFCAELGGTPAASFEALCASDLDAIYIATLNDS HARYAIAALAAGKAVLCEKPATVNARELEAVLAAAAAARRLFMEAMKPPFYPLYRRLREHLARDPIGAVRLVRAGGAFST VPADHPSFSAAAAGGALLDIGIYELFLAVDWLGEAHEVQTLGRVGASGVDVFASLNSRHAEGGIAQLFCGLDVMGRGDAL LGAAGGTVTIHENWWNPAKATIRYADGRVVELDAPFSGGGLNYETEHFCALLREGRLESPVMTHAHSRHMIALCDAARAA LGVRFAADDASAG >Mature_332_residues TLPSSQPIRFGIVGAGAIARRFAQSLGHVPDAVLAQVWARRPEAAAAFCAELGGTPAASFEALCASDLDAIYIATLNDSH ARYAIAALAAGKAVLCEKPATVNARELEAVLAAAAAARRLFMEAMKPPFYPLYRRLREHLARDPIGAVRLVRAGGAFSTV PADHPSFSAAAAGGALLDIGIYELFLAVDWLGEAHEVQTLGRVGASGVDVFASLNSRHAEGGIAQLFCGLDVMGRGDALL GAAGGTVTIHENWWNPAKATIRYADGRVVELDAPFSGGGLNYETEHFCALLREGRLESPVMTHAHSRHMIALCDAARAAL GVRFAADDASAG
Specific function: Unknown
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gfo/idh/mocA family [H]
Homologues:
Organism=Homo sapiens, GI7657212, Length=334, Percent_Identity=32.0359281437126, Blast_Score=126, Evalue=4e-29, Organism=Escherichia coli, GI145693182, Length=329, Percent_Identity=27.9635258358663, Blast_Score=95, Evalue=8e-21, Organism=Drosophila melanogaster, GI24581117, Length=339, Percent_Identity=30.6784660766962, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI24581115, Length=346, Percent_Identity=26.878612716763, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24584727, Length=332, Percent_Identity=25.6024096385542, Blast_Score=90, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000683 [H]
Pfam domain/function: PF01408 GFO_IDH_MocA [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 34881; Mature: 34750
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPSSQPIRFGIVGAGAIARRFAQSLGHVPDAVLAQVWARRPEAAAAFCAELGGTPAAS CCCCCCCCEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHH FEALCASDLDAIYIATLNDSHARYAIAALAAGKAVLCEKPATVNARELEAVLAAAAAARR HHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH LFMEAMKPPFYPLYRRLREHLARDPIGAVRLVRAGGAFSTVPADHPSFSAAAAGGALLDI HHHHHHCCCCHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCCCCCCCHHHCCCHHHHH GIYELFLAVDWLGEAHEVQTLGRVGASGVDVFASLNSRHAEGGIAQLFCGLDVMGRGDAL HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEE LGAAGGTVTIHENWWNPAKATIRYADGRVVELDAPFSGGGLNYETEHFCALLREGRLESP EECCCCEEEEECCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCC VMTHAHSRHMIALCDAARAALGVRFAADDASAG HHHHCCCCCEEEHHHHHHHHHCEEEECCCCCCC >Mature Secondary Structure TLPSSQPIRFGIVGAGAIARRFAQSLGHVPDAVLAQVWARRPEAAAAFCAELGGTPAAS CCCCCCCEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHH FEALCASDLDAIYIATLNDSHARYAIAALAAGKAVLCEKPATVNARELEAVLAAAAAARR HHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH LFMEAMKPPFYPLYRRLREHLARDPIGAVRLVRAGGAFSTVPADHPSFSAAAAGGALLDI HHHHHHCCCCHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCCCCCCCHHHCCCHHHHH GIYELFLAVDWLGEAHEVQTLGRVGASGVDVFASLNSRHAEGGIAQLFCGLDVMGRGDAL HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEE LGAAGGTVTIHENWWNPAKATIRYADGRVVELDAPFSGGGLNYETEHFCALLREGRLESP EECCCCEEEEECCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCC VMTHAHSRHMIALCDAARAALGVRFAADDASAG HHHHCCCCCEEEHHHHHHHHHCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]