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The map label for this gene is dgoR [H]

Identifier: 238027540

GI number: 238027540

Start: 2137865

End: 2138602

Strand: Reverse

Name: dgoR [H]

Synonym: bglu_1g19580

Alternate gene names: 238027540

Gene position: 2138602-2137865 (Counterclockwise)

Preceding gene: 238027541

Following gene: 238027539

Centisome position: 54.74

GC content: 68.02

Gene sequence:

>738_bases
ATGGAACAGACAAAAGACAGGTCGCTCGTCAGCAAGGTAATGGACGGGCTCGTCACGGGGATCGTGGAAGACAAGTACGG
CGGCATCCTGCCGCCTCAGGACGTGCTGTCGAGGGATTTCGACGTCAGCCGGACGGTGATGCGCGAAGCCCTGTCGATGT
TGCTCGCGCGTGACATGCTCGATGTGCGTCCGAAAGTGGGCACGCGCGTCAGACCGATGCGCGACTGGCGCATGATCGAC
GAGGACGTGGTGAACTGGCGCTTCCGTGCGAAACCGGACCCGCAGTTCATGCGCGACGTGCTCGAATTCCGCATGCTGAT
CGAACCGCGCGCGACGGGGCAGGCCGCCGAGCGCGCGAACGCGGCGGAGATCGCCGGTATTCGTGAAGCCTTCGAGGCAT
TCCGCATGCTCGAGCCGGGCGAGGCGAACTACGACGCCGCCGACGAGCGTTTGCATGCGCGCATCGTTCAGGCGAGCGGC
AACCAGTTCTACCAGCAGATGAGCGCGATCGTCTGCGGCGCGCTGCGGCTGGTGCGCGCGCAGGCGGCCAACCGTGAAGG
CAACCACGAGCGGCTGGTGGGCCTGCACGAGCGCATCGTCGTGGCGATCGAGCAGCGCGACGCGCCCGCGGCGGAGGCGG
CCGCGCGCGAACTGATCGACCTGACGACCGAGGTGCCGCGTCAGGCACCGGCGCAAGCGCATGCGGGCGCCGTGGGCGCC
GTGGGCGTCGCGGGCTGA

Upstream 100 bases:

>100_bases
AGAATAGTGTCGCGTACATTTCCAATAAAACGAGAGAAAGGGGGCCAGGCCTAACTGCGGGGCAGTACGCCAGCACAGAT
AAGTAACGGGGAGTTCTCGT

Downstream 100 bases:

>100_bases
GGCGGGCTGCAGTCGCCGCGACGCTGCACGCGCTAGCCGGCGGGACATCGACCCGCGCCGGCCGTTATCATGACGGCCGG
CCGCCGGCTTGGCCGGCGCG

Product: GntR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MEQTKDRSLVSKVMDGLVTGIVEDKYGGILPPQDVLSRDFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVNWRFRAKPDPQFMRDVLEFRMLIEPRATGQAAERANAAEIAGIREAFEAFRMLEPGEANYDAADERLHARIVQASG
NQFYQQMSAIVCGALRLVRAQAANREGNHERLVGLHERIVVAIEQRDAPAAEAAARELIDLTTEVPRQAPAQAHAGAVGA
VGVAG

Sequences:

>Translated_245_residues
MEQTKDRSLVSKVMDGLVTGIVEDKYGGILPPQDVLSRDFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVNWRFRAKPDPQFMRDVLEFRMLIEPRATGQAAERANAAEIAGIREAFEAFRMLEPGEANYDAADERLHARIVQASG
NQFYQQMSAIVCGALRLVRAQAANREGNHERLVGLHERIVVAIEQRDAPAAEAAARELIDLTTEVPRQAPAQAHAGAVGA
VGVAG
>Mature_245_residues
MEQTKDRSLVSKVMDGLVTGIVEDKYGGILPPQDVLSRDFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVNWRFRAKPDPQFMRDVLEFRMLIEPRATGQAAERANAAEIAGIREAFEAFRMLEPGEANYDAADERLHARIVQASG
NQFYQQMSAIVCGALRLVRAQAANREGNHERLVGLHERIVVAIEQRDAPAAEAAARELIDLTTEVPRQAPAQAHAGAVGA
VGVAG

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=215, Percent_Identity=29.3023255813954, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI48994961, Length=225, Percent_Identity=28.4444444444444, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27199; Mature: 27199

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQTKDRSLVSKVMDGLVTGIVEDKYGGILPPQDVLSRDFDVSRTVMREALSMLLARDML
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DVRPKVGTRVRPMRDWRMIDEDVVNWRFRAKPDPQFMRDVLEFRMLIEPRATGQAAERAN
HCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCC
AAEIAGIREAFEAFRMLEPGEANYDAADERLHARIVQASGNQFYQQMSAIVCGALRLVRA
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
QAANREGNHERLVGLHERIVVAIEQRDAPAAEAAARELIDLTTEVPRQAPAQAHAGAVGA
HHHCCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCC
VGVAG
CCCCC
>Mature Secondary Structure
MEQTKDRSLVSKVMDGLVTGIVEDKYGGILPPQDVLSRDFDVSRTVMREALSMLLARDML
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DVRPKVGTRVRPMRDWRMIDEDVVNWRFRAKPDPQFMRDVLEFRMLIEPRATGQAAERAN
HCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCC
AAEIAGIREAFEAFRMLEPGEANYDAADERLHARIVQASGNQFYQQMSAIVCGALRLVRA
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
QAANREGNHERLVGLHERIVVAIEQRDAPAAEAAARELIDLTTEVPRQAPAQAHAGAVGA
HHHCCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCC
VGVAG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]