Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238027516
Identifier: 238027516
GI number: 238027516
Start: 2116334
End: 2117932
Strand: Reverse
Name: 238027516
Synonym: bglu_1g19310
Alternate gene names: NA
Gene position: 2117932-2116334 (Counterclockwise)
Preceding gene: 238027517
Following gene: 238027514
Centisome position: 54.22
GC content: 62.85
Gene sequence:
>1599_bases ATGGTGAGCGGCATGGACGAACATGACTTCTCGCAATTGCCGTCGGCCGCTCAGGCCTATATCCGAGAACTGGAGGCGCG CAACCGACAACTAGGCGAACGCATCGCCCAGTTGGAGGAGCAGTTCCGCTTGGCGCAGAGCAAACGCTTCGCACCGAGCA GCGAGAAGCTGAAGGACCGCGTATTCGACGAGGCCGAGCAGATGGCTGCGGCAGCGCCATCGGAGGACCCCGACGACGAC GCGTTCGCGTTGCCGGACACAGGGCTGCCCGCACCCGATGAGCCAGAGCGGGGCAAGCGAGGCCGCAAACCGTTGCCGGC CGAGCTGCCGCGCCAGCGCATTGAATACGATCTACCCGACGATGAGAAGGTCTGCCCCTGCTGCCGCAGCGCGATGCATC GCATGGGCGAAGAAGTCAGCGAGCAACTGCACTTCGAAGTGAAAGCCTCTGTGCTGCAGCACGTTCGCTTCAAGTACGCA TGTCGCCACTGCGAGCGCAATGCCGAGAGCACGCCGATCGTGACCGCCCCGATGCCGGCGCAGCCGCTGCCGGGCAGCAA TGCGAGCGCAGCGCTCATCGCCACCGTGACGGCGGGCAAATATGTCGATGGCACGCCGCTATACCGCATGGAGGATGCGC TCTCGCGCGCGAACATCGCGGTGGGCCGCGGCACGCTGGCCAACTGGATCATCCGGCCCGCTCAACTGCACTACAGCCGA CTGTACGAGGCCTTGCGCCAAACGCTGCTATCGCAACAGTTGATTCACGGCGACGAGACGACGGTGCAGGTTCTCAAAGA ACCGGGCAAGACCGCGCAAAGCACCTCGTATATGTGGGTCTATCGCAGTGCCGAGCAATGCGAGCAGCCGGTGGTGCTGT TCGACTACCAGCCAGGGCGCGGCCAAGAGTATCCGCAAGCGTTCCTGGCCGGATACACGGGCATGCTGATGAGTGACGGC TACGCTGCGTGGCGCACGCTCGACGCAGCGACGCACTTGGGCTGCCTTGCCCACGCCCGTAGGGCGTTCGTCGATGCGCT CAAAGGTCAGAAGAAGCCCGGTGGGCGTGCGGCACAGGCTCTTGAGTACTTCAAGGCGTTGTATCAGGTCGAGACGCTCG CCAAGGGCGGTCTGCCCGAAGGAGAAACCCGCGACGATTACACGTACCGATTACGCCAGGAACATAGCGTGCCGTTGCTC ACTGCATTCAAGACCTGGCTGGACGAGCAGGCGCCACACGTGTTGCCCGAAAGTCTGCTGGGCAAGGCGATCAGCTATAC GCGCAATCAATGGGAGTATCTGAGCCGCTACGTCATCGACGGCCGCGCCCCAATCGACAATAACGTTATCGAACGCGACA TCAGGCCCTTCTGCACAGGCCGCAAATCTTGGCTGTTCAGCGACACGGTCGCTGGCGCGAAGGCGAGCGCAATGGTCTAC AGTCTCATGCTCACGTGCCGCGCATGCAACGTCGAGCCGTATGCCTACCTGCTTCATGTGCTCACCGAACTGCCTCAGCG AGCCCCGGATGCCGACATCACGGACTTGCTGCCGTTCAACTTCGCGAAACGGCAAACGGCTACACCGCCGCCGCCTTGA
Upstream 100 bases:
>100_bases TCATGCGAGTTGAAGGCGGCGCCAACTGATGTTGTCGGTAAACAACGCGCGCGACGGTTGTTGCCCATTTCCGTAAACCC ACTGGGCGCGCCGCTCCGGT
Downstream 100 bases:
>100_bases TCGATCGAGCGCATAGCTTCGGCCCGACCGTCAACGTGTGGCGAATTGAGCGCTTACGATAAAACTCCTGCAGGATGGTT TTATGGAACCGCTCGCAGAT
Product: transposase IS66
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 532; Mature: 532
Protein sequence:
>532_residues MVSGMDEHDFSQLPSAAQAYIRELEARNRQLGERIAQLEEQFRLAQSKRFAPSSEKLKDRVFDEAEQMAAAAPSEDPDDD AFALPDTGLPAPDEPERGKRGRKPLPAELPRQRIEYDLPDDEKVCPCCRSAMHRMGEEVSEQLHFEVKASVLQHVRFKYA CRHCERNAESTPIVTAPMPAQPLPGSNASAALIATVTAGKYVDGTPLYRMEDALSRANIAVGRGTLANWIIRPAQLHYSR LYEALRQTLLSQQLIHGDETTVQVLKEPGKTAQSTSYMWVYRSAEQCEQPVVLFDYQPGRGQEYPQAFLAGYTGMLMSDG YAAWRTLDAATHLGCLAHARRAFVDALKGQKKPGGRAAQALEYFKALYQVETLAKGGLPEGETRDDYTYRLRQEHSVPLL TAFKTWLDEQAPHVLPESLLGKAISYTRNQWEYLSRYVIDGRAPIDNNVIERDIRPFCTGRKSWLFSDTVAGAKASAMVY SLMLTCRACNVEPYAYLLHVLTELPQRAPDADITDLLPFNFAKRQTATPPPP
Sequences:
>Translated_532_residues MVSGMDEHDFSQLPSAAQAYIRELEARNRQLGERIAQLEEQFRLAQSKRFAPSSEKLKDRVFDEAEQMAAAAPSEDPDDD AFALPDTGLPAPDEPERGKRGRKPLPAELPRQRIEYDLPDDEKVCPCCRSAMHRMGEEVSEQLHFEVKASVLQHVRFKYA CRHCERNAESTPIVTAPMPAQPLPGSNASAALIATVTAGKYVDGTPLYRMEDALSRANIAVGRGTLANWIIRPAQLHYSR LYEALRQTLLSQQLIHGDETTVQVLKEPGKTAQSTSYMWVYRSAEQCEQPVVLFDYQPGRGQEYPQAFLAGYTGMLMSDG YAAWRTLDAATHLGCLAHARRAFVDALKGQKKPGGRAAQALEYFKALYQVETLAKGGLPEGETRDDYTYRLRQEHSVPLL TAFKTWLDEQAPHVLPESLLGKAISYTRNQWEYLSRYVIDGRAPIDNNVIERDIRPFCTGRKSWLFSDTVAGAKASAMVY SLMLTCRACNVEPYAYLLHVLTELPQRAPDADITDLLPFNFAKRQTATPPPP >Mature_532_residues MVSGMDEHDFSQLPSAAQAYIRELEARNRQLGERIAQLEEQFRLAQSKRFAPSSEKLKDRVFDEAEQMAAAAPSEDPDDD AFALPDTGLPAPDEPERGKRGRKPLPAELPRQRIEYDLPDDEKVCPCCRSAMHRMGEEVSEQLHFEVKASVLQHVRFKYA CRHCERNAESTPIVTAPMPAQPLPGSNASAALIATVTAGKYVDGTPLYRMEDALSRANIAVGRGTLANWIIRPAQLHYSR LYEALRQTLLSQQLIHGDETTVQVLKEPGKTAQSTSYMWVYRSAEQCEQPVVLFDYQPGRGQEYPQAFLAGYTGMLMSDG YAAWRTLDAATHLGCLAHARRAFVDALKGQKKPGGRAAQALEYFKALYQVETLAKGGLPEGETRDDYTYRLRQEHSVPLL TAFKTWLDEQAPHVLPESLLGKAISYTRNQWEYLSRYVIDGRAPIDNNVIERDIRPFCTGRKSWLFSDTVAGAKASAMVY SLMLTCRACNVEPYAYLLHVLTELPQRAPDADITDLLPFNFAKRQTATPPPP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 25 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004291 [H]
Pfam domain/function: PF03050 Transposase_25 [H]
EC number: NA
Molecular weight: Translated: 59596; Mature: 59596
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSGMDEHDFSQLPSAAQAYIRELEARNRQLGERIAQLEEQFRLAQSKRFAPSSEKLKDR CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH VFDEAEQMAAAAPSEDPDDDAFALPDTGLPAPDEPERGKRGRKPLPAELPRQRIEYDLPD HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHCCCCCCC DEKVCPCCRSAMHRMGEEVSEQLHFEVKASVLQHVRFKYACRHCERNAESTPIVTAPMPA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC QPLPGSNASAALIATVTAGKYVDGTPLYRMEDALSRANIAVGRGTLANWIIRPAQLHYSR CCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LYEALRQTLLSQQLIHGDETTVQVLKEPGKTAQSTSYMWVYRSAEQCEQPVVLFDYQPGR HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCEEEEECCCCC GQEYPQAFLAGYTGMLMSDGYAAWRTLDAATHLGCLAHARRAFVDALKGQKKPGGRAAQA CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH LEYFKALYQVETLAKGGLPEGETRDDYTYRLRQEHSVPLLTAFKTWLDEQAPHVLPESLL HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHH GKAISYTRNQWEYLSRYVIDGRAPIDNNVIERDIRPFCTGRKSWLFSDTVAGAKASAMVY HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHCCCCCEEEHHHHCCCHHHHHHH SLMLTCRACNVEPYAYLLHVLTELPQRAPDADITDLLPFNFAKRQTATPPPP HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHCCCCCCCCC >Mature Secondary Structure MVSGMDEHDFSQLPSAAQAYIRELEARNRQLGERIAQLEEQFRLAQSKRFAPSSEKLKDR CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH VFDEAEQMAAAAPSEDPDDDAFALPDTGLPAPDEPERGKRGRKPLPAELPRQRIEYDLPD HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHCCCCCCC DEKVCPCCRSAMHRMGEEVSEQLHFEVKASVLQHVRFKYACRHCERNAESTPIVTAPMPA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC QPLPGSNASAALIATVTAGKYVDGTPLYRMEDALSRANIAVGRGTLANWIIRPAQLHYSR CCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LYEALRQTLLSQQLIHGDETTVQVLKEPGKTAQSTSYMWVYRSAEQCEQPVVLFDYQPGR HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCEEEEECCCCC GQEYPQAFLAGYTGMLMSDGYAAWRTLDAATHLGCLAHARRAFVDALKGQKKPGGRAAQA CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH LEYFKALYQVETLAKGGLPEGETRDDYTYRLRQEHSVPLLTAFKTWLDEQAPHVLPESLL HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHH GKAISYTRNQWEYLSRYVIDGRAPIDNNVIERDIRPFCTGRKSWLFSDTVAGAKASAMVY HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHCCCCCEEEHHHHCCCHHHHHHH SLMLTCRACNVEPYAYLLHVLTELPQRAPDADITDLLPFNFAKRQTATPPPP HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]