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The map label for this gene is csd [H]

Identifier: 238027500

GI number: 238027500

Start: 2096124

End: 2097311

Strand: Reverse

Name: csd [H]

Synonym: bglu_1g19140

Alternate gene names: 238027500

Gene position: 2097311-2096124 (Counterclockwise)

Preceding gene: 238027502

Following gene: 238027499

Centisome position: 53.69

GC content: 59.26

Gene sequence:

>1188_bases
ATGAGGTTCTGCACGATGTTACAACGTTTCGACGTCGCCGGCATACGCCGCCTTTTTCCGATTGCAGACCAAACGCTTTA
TTTCGACTCGGCGCGCCACACACCTCTTGCCGTGCCGGTCCGGCGTGCGTTGGAACGATTTCTTGCCGAGAGCGAGGCGC
ACGCAGGACCTAAATCGGTATGGCTCGATCGCGGTGAGCGGGTGCGCGAGAAGATGGCGAAACTGATCGGCGCGCGTCCC
GAGGAGGTTGCATTTACCAAGAATACATCCGACGGACTCAACATCGCAGCGAATGCGATCCCTTTCTGCGAAGGCGATGA
AATCCTGTTGAACAATGCTGATCATCCTAATATCGGATCGATTTTCCGGTATCGCGGGCGCGGCGGCGTGAACATGCGCA
GCGTGGATCGACTGCGGACAAGTGAAGATCTGGACACATTGGTGGGGGCTATCGGCCCACGGGTCAAGGCAGTCGTCTTG
TCCCACGTCGCATTCGATTCCGGATTCCGCTCCGACATTGAAATGATCGGGCAGCAATGCGCTGAAACCGGTGCTTATTG
GGTGGTCGACGGCATTCAGTCGGTGGGGGTGTTGCCCTTCGACGTCGATCGATCGCGCATCTCTTTGGCTGCGTTTGGAT
GCAACAAGGGGTTGCTCACCCCTCCGGGCCTCGGGGTGATGTATTGCAGAAGCGGGCAGCCGCAATTGCAACCGCTGTAC
GCACCTGCCACATGTGCGGAAGGCGACGGGAAACGTGAGGGCGATCGCGACGACGCAAAGCGGTTCGAATACGGGCTCGC
AAATCTGCCGGCACTGCACGCATTGGATGCCGCGCTGGACTTGATCACCGACATAGGGGTGGCGGATATCGCCGAGCACG
TGCTGGATTTGGGCGAATACCTCTCCGACCGAATGGCTGAACTACGTGTCGGCGTGTTGGCGGGCGGCCCGCGCGCTCGT
CGCTCGCACATATGTTTGCTGGATCTACCCGGGCCGGGCTGGCAGACGTATCTCGCGGAAAATCGCGTGCGGTTCTCCAT
GGAGCGCGACGGAGTGAGAATCGCGTTCGCTATGTTCAACACCCGGCAAGACGTCGATCAACTCGTCGAGTTGATTCGAG
ACAGGTTGCATGCAACCGGCGACTACGTTCGGGACGGCAAGCGAGTCGAGGACACCCGCGCAAATTGA

Upstream 100 bases:

>100_bases
GCGTGAGCACGAATGAGTCAGGGTAACAGCCGGGTGGCCGATGCGAATCGTCTGTTGATCACGCTCCGCAGCCTGGACTA
CAGGGTTCAAGCCGCGCGTT

Downstream 100 bases:

>100_bases
CGTTTACGGAGAATCGAAAAGTTGCTGCCCAGCTTTCCACTCGTCACGCTACTCACGCCCAACCGCGTAAAACGGTCCGT
CTACGACCTCAACGCGGACT

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MRFCTMLQRFDVAGIRRLFPIADQTLYFDSARHTPLAVPVRRALERFLAESEAHAGPKSVWLDRGERVREKMAKLIGARP
EEVAFTKNTSDGLNIAANAIPFCEGDEILLNNADHPNIGSIFRYRGRGGVNMRSVDRLRTSEDLDTLVGAIGPRVKAVVL
SHVAFDSGFRSDIEMIGQQCAETGAYWVVDGIQSVGVLPFDVDRSRISLAAFGCNKGLLTPPGLGVMYCRSGQPQLQPLY
APATCAEGDGKREGDRDDAKRFEYGLANLPALHALDAALDLITDIGVADIAEHVLDLGEYLSDRMAELRVGVLAGGPRAR
RSHICLLDLPGPGWQTYLAENRVRFSMERDGVRIAFAMFNTRQDVDQLVELIRDRLHATGDYVRDGKRVEDTRAN

Sequences:

>Translated_395_residues
MRFCTMLQRFDVAGIRRLFPIADQTLYFDSARHTPLAVPVRRALERFLAESEAHAGPKSVWLDRGERVREKMAKLIGARP
EEVAFTKNTSDGLNIAANAIPFCEGDEILLNNADHPNIGSIFRYRGRGGVNMRSVDRLRTSEDLDTLVGAIGPRVKAVVL
SHVAFDSGFRSDIEMIGQQCAETGAYWVVDGIQSVGVLPFDVDRSRISLAAFGCNKGLLTPPGLGVMYCRSGQPQLQPLY
APATCAEGDGKREGDRDDAKRFEYGLANLPALHALDAALDLITDIGVADIAEHVLDLGEYLSDRMAELRVGVLAGGPRAR
RSHICLLDLPGPGWQTYLAENRVRFSMERDGVRIAFAMFNTRQDVDQLVELIRDRLHATGDYVRDGKRVEDTRAN
>Mature_395_residues
MRFCTMLQRFDVAGIRRLFPIADQTLYFDSARHTPLAVPVRRALERFLAESEAHAGPKSVWLDRGERVREKMAKLIGARP
EEVAFTKNTSDGLNIAANAIPFCEGDEILLNNADHPNIGSIFRYRGRGGVNMRSVDRLRTSEDLDTLVGAIGPRVKAVVL
SHVAFDSGFRSDIEMIGQQCAETGAYWVVDGIQSVGVLPFDVDRSRISLAAFGCNKGLLTPPGLGVMYCRSGQPQLQPLY
APATCAEGDGKREGDRDDAKRFEYGLANLPALHALDAALDLITDIGVADIAEHVLDLGEYLSDRMAELRVGVLAGGPRAR
RSHICLLDLPGPGWQTYLAENRVRFSMERDGVRIAFAMFNTRQDVDQLVELIRDRLHATGDYVRDGKRVEDTRAN

Specific function: Cysteine Desulfurases Mobilize The Sulfur From L- Cysteine To Yield L-Alanine, An Essential Step In Sulfur Metabolism For Biosynthesis Of A Variety Of Sulfur-Containing Biomolecules. Component Of The Suf Operon, Which Is Activated And Required Under Speci

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Homo sapiens, GI32307132, Length=217, Percent_Identity=27.6497695852535, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1787970, Length=406, Percent_Identity=24.8768472906404, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI48994898, Length=220, Percent_Identity=27.7272727272727, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1789175, Length=405, Percent_Identity=25.4320987654321, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI20129463, Length=216, Percent_Identity=26.3888888888889, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 43639; Mature: 43639

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFCTMLQRFDVAGIRRLFPIADQTLYFDSARHTPLAVPVRRALERFLAESEAHAGPKSV
CHHHHHHHHHCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
WLDRGERVREKMAKLIGARPEEVAFTKNTSDGLNIAANAIPFCEGDEILLNNADHPNIGS
HHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEHHCCCCCCCCCEEEECCCCCCCCCH
IFRYRGRGGVNMRSVDRLRTSEDLDTLVGAIGPRVKAVVLSHVAFDSGFRSDIEMIGQQC
HHEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
AETGAYWVVDGIQSVGVLPFDVDRSRISLAAFGCNKGLLTPPGLGVMYCRSGQPQLQPLY
HHCCCEEEEECHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEE
APATCAEGDGKREGDRDDAKRFEYGLANLPALHALDAALDLITDIGVADIAEHVLDLGEY
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LSDRMAELRVGVLAGGPRARRSHICLLDLPGPGWQTYLAENRVRFSMERDGVRIAFAMFN
HHHHHHHHHHHEEECCCCCCCCCEEEEECCCCCHHHHHHCCCEEEEECCCCEEEEEEECC
TRQDVDQLVELIRDRLHATGDYVRDGKRVEDTRAN
CHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRFCTMLQRFDVAGIRRLFPIADQTLYFDSARHTPLAVPVRRALERFLAESEAHAGPKSV
CHHHHHHHHHCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
WLDRGERVREKMAKLIGARPEEVAFTKNTSDGLNIAANAIPFCEGDEILLNNADHPNIGS
HHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEHHCCCCCCCCCEEEECCCCCCCCCH
IFRYRGRGGVNMRSVDRLRTSEDLDTLVGAIGPRVKAVVLSHVAFDSGFRSDIEMIGQQC
HHEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
AETGAYWVVDGIQSVGVLPFDVDRSRISLAAFGCNKGLLTPPGLGVMYCRSGQPQLQPLY
HHCCCEEEEECHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEE
APATCAEGDGKREGDRDDAKRFEYGLANLPALHALDAALDLITDIGVADIAEHVLDLGEY
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LSDRMAELRVGVLAGGPRARRSHICLLDLPGPGWQTYLAENRVRFSMERDGVRIAFAMFN
HHHHHHHHHHHEEECCCCCCCCCEEEEECCCCCHHHHHHCCCEEEEECCCCEEEEEEECC
TRQDVDQLVELIRDRLHATGDYVRDGKRVEDTRAN
CHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]