| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027479
Identifier: 238027479
GI number: 238027479
Start: 2064273
End: 2064710
Strand: Reverse
Name: 238027479
Synonym: bglu_1g18820
Alternate gene names: NA
Gene position: 2064710-2064273 (Counterclockwise)
Preceding gene: 238027482
Following gene: 238027478
Centisome position: 52.85
GC content: 68.04
Gene sequence:
>438_bases ATGAAACCGCTCGATTTTTCCGGCATCGACCTGTTGCGTGCGGCGGCCGCGGGCGACGTGCCCGCACCGTCGATCACCCG GACCATGCCGATGCAGCTCGACACGGTCGAGCTCGGCTACGTGAGGATGACGGCACGCGCCGACGAGCGCCATCTGAATC CGCTGGGCGGCGTGCATGGCGGATTCGCCGCCACGGTGCTCGATTCGGTGACGGGCTGCGCGGTGCATTCGATGCTCGAG CAGGGCGTCGGCTACGGCACGGTCGACCTGCACGTGAAGATGCTGCGCCCGGTGCCGCGCGACGTCGAACTGATCGCCGA GGGGCGCGTGACGCATCTGTCGCGCACGCTCGGCGTTGCCGAGGGCACGCTCAAGACCCCCGACGACAAGATCGTCGCGC AAGGCTCGGCCACCTGCTTCATCCTGCGGCCCGAATAA
Upstream 100 bases:
>100_bases GATTACCGCGTTGACAGCATTCGATTGCGCAAAGAATAATGCGTTCTGTTTTGGAACTAACTAATGCGCCGGAATTCGCC CGGCGATAAGGAGTGTGCTG
Downstream 100 bases:
>100_bases GCGCGCAGCGGGGGCGAGGGCGCGCCACGGCCCACGCCTTCGGCGCCGTCTTGACCGCTGCCCGCCGCGCGGCCGCCGCG GCTACGCGGTGCCCGATGCG
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: Phenylacetic Acid Degradation-Related Protein; Thioesterase Family Protein; Thioesterase; Aromatic Compounds Catabolic Protein; PaaI Thioesterase; Aromatic Compounds Degradation Protein PaaI; Domain 1 Protein; Protein Involved In Aromatic Compounds Catabolism; Orf_Bo
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MKPLDFSGIDLLRAAAAGDVPAPSITRTMPMQLDTVELGYVRMTARADERHLNPLGGVHGGFAATVLDSVTGCAVHSMLE QGVGYGTVDLHVKMLRPVPRDVELIAEGRVTHLSRTLGVAEGTLKTPDDKIVAQGSATCFILRPE
Sequences:
>Translated_145_residues MKPLDFSGIDLLRAAAAGDVPAPSITRTMPMQLDTVELGYVRMTARADERHLNPLGGVHGGFAATVLDSVTGCAVHSMLE QGVGYGTVDLHVKMLRPVPRDVELIAEGRVTHLSRTLGVAEGTLKTPDDKIVAQGSATCFILRPE >Mature_145_residues MKPLDFSGIDLLRAAAAGDVPAPSITRTMPMQLDTVELGYVRMTARADERHLNPLGGVHGGFAATVLDSVTGCAVHSMLE QGVGYGTVDLHVKMLRPVPRDVELIAEGRVTHLSRTLGVAEGTLKTPDDKIVAQGSATCFILRPE
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15417; Mature: 15417
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00622 HTH_LUXR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPLDFSGIDLLRAAAAGDVPAPSITRTMPMQLDTVELGYVRMTARADERHLNPLGGVHG CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEECEEEECEEEEECCCCCCCCCCCCCCCC GFAATVLDSVTGCAVHSMLEQGVGYGTVDLHVKMLRPVPRDVELIAEGRVTHLSRTLGVA CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHCCC EGTLKTPDDKIVAQGSATCFILRPE CCCCCCCCCCEEECCCCEEEEECCC >Mature Secondary Structure MKPLDFSGIDLLRAAAAGDVPAPSITRTMPMQLDTVELGYVRMTARADERHLNPLGGVHG CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEECEEEECEEEEECCCCCCCCCCCCCCCC GFAATVLDSVTGCAVHSMLEQGVGYGTVDLHVKMLRPVPRDVELIAEGRVTHLSRTLGVA CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHCCC EGTLKTPDDKIVAQGSATCFILRPE CCCCCCCCCCEEECCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA