| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027226
Identifier: 238027226
GI number: 238027226
Start: 1764526
End: 1765812
Strand: Reverse
Name: 238027226
Synonym: bglu_1g16120
Alternate gene names: NA
Gene position: 1765812-1764526 (Counterclockwise)
Preceding gene: 238027227
Following gene: 238027221
Centisome position: 45.2
GC content: 72.18
Gene sequence:
>1287_bases ATGTCCGTCCCGTCACCGGCCGCTGCCGGTTCCGCCCGCCTGCCCGCGGCACGCCACGAGATCGTGATCGTCGGCGCCGG CGCCGCCGGCATCGCTACCGCAGCGAGCCTGCTGCGGCGCGACCGCTCGCTCGACATCGCGCTCGTCGATCCCGCCGACA CGCATTACTACCAGCCCGGCTGGACCCTGGTCGGCGGCGGCGTCTTCGATGCGGCGTCCACCGCGCGGCCAATGAAATCG GTGCTGCCGCGCGGCGTCACGCATATCCGCGCGGCGGTCACCGCGTTCTCGCCGGAGCACCACACCGTGACGCTCGAGGG CGGCGCCACGCTCGGCTATCGCGAACTGATCGTCTGCCCCGGTCTGGAACTGCACTGGGCCGGCATCGACGGGCTCGTCG ACACACTCGGGCGGCACGGCGTGACCTCGAACTACCGCTATGATCTCGCCCCCTACACGTGGCAGCTCGTGCAATCGCTC AAGCAAGGGCGCGCGCTGTTTACCCAGCCGCCGATGCCGATCAAGTGCGCGGGCGCACCGCAAAAGGCGATGTACCTGGC CGCCGATCACTGGCGCCGCAGCGGCCGGCTGGCCGGCATCGAGATCGAATTCCACCTGGCCGGCGCGGCGCTGTTCGGCG TGCCGGCCTACGTGCCTGCCCTGATGGAGTCGGTCCAGGCCTACGGGATCGACCTGCGCTTCGGCGACCAGCTGATCGCC GTGGACGGCCCGGGCCGGCGCGCCACGTTCCGGCGCGCCCGCGCGGAGGCCGACGGCGGCGGCAGCGAGGAGATCACGCG CGAGTTCGACCTGCTGCACGTGGTGCCGCCGCAGCGCGCGCCGGGCTTCGTGCGCGACAGCGCGCTCGCCGACCCGGCCG GCTGGATCGACGTCGATCCGGCGACGCTGCGCCATCGCATGTTCGCCAACATTCACGCGCTAGGCGACGCGACCAACACC ACCAACGCCAAGACCGCCGCCGCCGCGCGCAAGCAGGCGCCGGTGGTCGCCCACAACGTGCTGGCCGCGCTCGGCCGCGC GCGCGGCGTGGCGCGCTACGACGGCTACGGCTCGTGTCCGCTGACGGTGGCGCGCGGCCGCATCGTGCTGGCCGAATTCC TCTACGGCGGCAAGGTCGCGCCGACCTTCCCGAACTGGGTCAACGACGGCACGCGGCCGTCGCGCCTGGCCTGGTTTCTG AAGGAAAAGGTGCTGCCGCCGCTGTACTGGCATGCGATGCTGAAGGGCCGCGAGTGGTGTGCGCGGCCCGCGATCAGCGA GGCCTGA
Upstream 100 bases:
>100_bases TCGACGCGCTCTAAGGCGCCGCCCGCGCCGCCGGGCAGCGCCGCTTCGCTGCACCACCACAACAACGCCATCAAGCATAT CCCCTGCCAGGAGCCCCAAC
Downstream 100 bases:
>100_bases GCGGCCTCAGGCGCTCGCGCGGGGCCCGATGCAGGGGCGCGGCGCGCGACGATGCGGGGCGTCGCGATCGGCAAGTGGGC GGGGCGTGTGGCCCGCCCAC
Product: pyridine nucleotide-disulfide family oxidoreductase
Products: NA
Alternate protein names: Oxidoreductase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Pyridine Nucleotide-Disulphide Oxidoreductase; SulfideQuinone Oxidoreductase; NAD(FAD)-Dependent Dehydrogenase; Sulfide Dehydrogenase Flavoprotein Subunit; Twin-Arginine Translocation Pathway Signal; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Sulfide-Quinone Reductase; Sulfide Quinone Oxidoreductase-Like Protein; Flavoprotein Reductase; Sulfide Dehydrogenase; Anti-Anti-Sigma Regulatory Factor; Filamentous Hemagglutinin; NAD(Fad)-Dependent Dehydrogenase Protein; Oxidoreductase Family Protein; FAD-Dependent Pyridine Nucleotide-Disulphideoxido Reductase; Oxidoreductase Pyridine Nucleotide-Disulphide Family; Pyridine Nucleotide-Disulphide Oxidoreductase Class-II; Sulfide-Quinone Oxidoreductase; NADH Dehydrogenase FAD-Containing Subunit; Sulfide Quinone-Rductase; Sulphide Quinone Reductase; Oxidoreductase FAD-Dependent; Pyridine Nucleotide-Disulfide Oxidoreductase Family Protein; SulfideQuinone Reductase; Pyridine Nucleotide-Disulfide Oxidoreductase Family; NAD(FAD)-Dependent Dehydrogenase-Like Protein; Sulfide Dehydrogenase Related Protein; Pyridine Nucleotide-Disulfide Oxidoreductase
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MSVPSPAAAGSARLPAARHEIVIVGAGAAGIATAASLLRRDRSLDIALVDPADTHYYQPGWTLVGGGVFDAASTARPMKS VLPRGVTHIRAAVTAFSPEHHTVTLEGGATLGYRELIVCPGLELHWAGIDGLVDTLGRHGVTSNYRYDLAPYTWQLVQSL KQGRALFTQPPMPIKCAGAPQKAMYLAADHWRRSGRLAGIEIEFHLAGAALFGVPAYVPALMESVQAYGIDLRFGDQLIA VDGPGRRATFRRARAEADGGGSEEITREFDLLHVVPPQRAPGFVRDSALADPAGWIDVDPATLRHRMFANIHALGDATNT TNAKTAAAARKQAPVVAHNVLAALGRARGVARYDGYGSCPLTVARGRIVLAEFLYGGKVAPTFPNWVNDGTRPSRLAWFL KEKVLPPLYWHAMLKGREWCARPAISEA
Sequences:
>Translated_428_residues MSVPSPAAAGSARLPAARHEIVIVGAGAAGIATAASLLRRDRSLDIALVDPADTHYYQPGWTLVGGGVFDAASTARPMKS VLPRGVTHIRAAVTAFSPEHHTVTLEGGATLGYRELIVCPGLELHWAGIDGLVDTLGRHGVTSNYRYDLAPYTWQLVQSL KQGRALFTQPPMPIKCAGAPQKAMYLAADHWRRSGRLAGIEIEFHLAGAALFGVPAYVPALMESVQAYGIDLRFGDQLIA VDGPGRRATFRRARAEADGGGSEEITREFDLLHVVPPQRAPGFVRDSALADPAGWIDVDPATLRHRMFANIHALGDATNT TNAKTAAAARKQAPVVAHNVLAALGRARGVARYDGYGSCPLTVARGRIVLAEFLYGGKVAPTFPNWVNDGTRPSRLAWFL KEKVLPPLYWHAMLKGREWCARPAISEA >Mature_427_residues SVPSPAAAGSARLPAARHEIVIVGAGAAGIATAASLLRRDRSLDIALVDPADTHYYQPGWTLVGGGVFDAASTARPMKSV LPRGVTHIRAAVTAFSPEHHTVTLEGGATLGYRELIVCPGLELHWAGIDGLVDTLGRHGVTSNYRYDLAPYTWQLVQSLK QGRALFTQPPMPIKCAGAPQKAMYLAADHWRRSGRLAGIEIEFHLAGAALFGVPAYVPALMESVQAYGIDLRFGDQLIAV DGPGRRATFRRARAEADGGGSEEITREFDLLHVVPPQRAPGFVRDSALADPAGWIDVDPATLRHRMFANIHALGDATNTT NAKTAAAARKQAPVVAHNVLAALGRARGVARYDGYGSCPLTVARGRIVLAEFLYGGKVAPTFPNWVNDGTRPSRLAWFLK EKVLPPLYWHAMLKGREWCARPAISEA
Specific function: Unknown
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI10864011, Length=398, Percent_Identity=35.929648241206, Blast_Score=286, Evalue=3e-77, Organism=Caenorhabditis elegans, GI115534373, Length=345, Percent_Identity=36.231884057971, Blast_Score=225, Evalue=3e-59, Organism=Caenorhabditis elegans, GI17539680, Length=422, Percent_Identity=31.7535545023697, Blast_Score=224, Evalue=5e-59, Organism=Drosophila melanogaster, GI24657386, Length=388, Percent_Identity=36.0824742268041, Blast_Score=246, Evalue=2e-65, Organism=Drosophila melanogaster, GI24657391, Length=388, Percent_Identity=36.0824742268041, Blast_Score=246, Evalue=2e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45919; Mature: 45788
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVPSPAAAGSARLPAARHEIVIVGAGAAGIATAASLLRRDRSLDIALVDPADTHYYQPG CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCEECCC WTLVGGGVFDAASTARPMKSVLPRGVTHIRAAVTAFSPEHHTVTLEGGATLGYRELIVCP CEEECCCHHCCHHHHHHHHHHHHCCHHHHHHHHHEECCCCCEEEEECCCCCCCEEEEEEC GLELHWAGIDGLVDTLGRHGVTSNYRYDLAPYTWQLVQSLKQGRALFTQPPMPIKCAGAP CCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHCCEEECCCCCCEEECCCC QKAMYLAADHWRRSGRLAGIEIEFHLAGAALFGVPAYVPALMESVQAYGIDLRFGDQLIA CHHEEEEHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEE VDGPGRRATFRRARAEADGGGSEEITREFDLLHVVPPQRAPGFVRDSALADPAGWIDVDP ECCCCCHHHHHHHHCCCCCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCEECCH ATLRHRMFANIHALGDATNTTNAKTAAAARKQAPVVAHNVLAALGRARGVARYDGYGSCP HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCC LTVARGRIVLAEFLYGGKVAPTFPNWVNDGTRPSRLAWFLKEKVLPPLYWHAMLKGREWC EEEECCCEEEEHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHHH ARPAISEA CCCCCCCC >Mature Secondary Structure SVPSPAAAGSARLPAARHEIVIVGAGAAGIATAASLLRRDRSLDIALVDPADTHYYQPG CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCEECCC WTLVGGGVFDAASTARPMKSVLPRGVTHIRAAVTAFSPEHHTVTLEGGATLGYRELIVCP CEEECCCHHCCHHHHHHHHHHHHCCHHHHHHHHHEECCCCCEEEEECCCCCCCEEEEEEC GLELHWAGIDGLVDTLGRHGVTSNYRYDLAPYTWQLVQSLKQGRALFTQPPMPIKCAGAP CCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHCCEEECCCCCCEEECCCC QKAMYLAADHWRRSGRLAGIEIEFHLAGAALFGVPAYVPALMESVQAYGIDLRFGDQLIA CHHEEEEHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEE VDGPGRRATFRRARAEADGGGSEEITREFDLLHVVPPQRAPGFVRDSALADPAGWIDVDP ECCCCCHHHHHHHHCCCCCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCEECCH ATLRHRMFANIHALGDATNTTNAKTAAAARKQAPVVAHNVLAALGRARGVARYDGYGSCP HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCC LTVARGRIVLAEFLYGGKVAPTFPNWVNDGTRPSRLAWFLKEKVLPPLYWHAMLKGREWC EEEECCCEEEEHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHHH ARPAISEA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA