| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is blh [H]
Identifier: 238027227
GI number: 238027227
Start: 1765899
End: 1766801
Strand: Reverse
Name: blh [H]
Synonym: bglu_1g16130
Alternate gene names: 238027227
Gene position: 1766801-1765899 (Counterclockwise)
Preceding gene: 238027229
Following gene: 238027226
Centisome position: 45.23
GC content: 71.43
Gene sequence:
>903_bases ATGACGTCCCAACCCGCCTTCACCGTCGATTCGTTCTTCGACCCGGCCACCAATACGGCCACGCACGTCGTGGTCGACAC CGCCACGCGCGAGTGCGCGATCGTCGACCCCGTGCTCGATTTCGATCCGAAGTCCGGCCGCACCCACCACCGCAGCGCCG AGCGCGTCGCCGCGCAGGTGGAGGCACTCGGCGCGCGCGTGCGCTGGCTGCTGGAAACCCATGTGCACGCCGACCACCTC TCGGCCGCGCCGCTGCTGCAGGCGCGCTTGGGCGGCGAGATCGCGATCGGCCGCGAGGTCACGCAGGTACAGAAGGTGTT CGGCACGCTGTTCGACGCCGGCCCGGACTTCGTGCCGGACGGCCGCCCGTTCGACCGGCTCGTCGACGACGGCGACACGC TCGCGCTCGGCAGGCTCGCGATCCGCGCGATGCATACGCCCGGCCACACGCCGGCCTGCATGACCTACCTGGTGGCGCGC GCGGATGGCACCTCGGCGCCGGCCGAGACGGCCGCGTTCGTCGGCGACACGCTGTTCATGCCCGACTACGGCACCGCGCG CTGCGACTTCCCCGGCGGCGACGCGCGCACGCTCTACCGCTCGATCCGCAAGGTGCTGAGCCTGCCGCCCGACACGCCGC TCTATCTGTGCCACGACTACGCGCCCCAGGGCCGACCGGTCTGCCTCGTCACCACCGTGGGCGCACAGCGGCGCGACAAC ATCCACGTCCACGAGGGAATCGACGAGGACACGTTCGTGGCGATGCGTACCGCGCGCGATGCGACGCTGGAGATGCCGGT GCTGATCCTGCCGTCGGTGCAGGTCAACATGCGCGCGGGGCGGCTGCCGGAGCCCGCGGCCAACGGGGTGCGCTACCTGA AGCTGCCGATCGACGCGCTCTAA
Upstream 100 bases:
>100_bases CGGATCAATTGATTAAGCGATACGCGCGCGCCGTGCACGACGCTGGCACGCATCTTGTCTCGCTCAGGCGTTTTCCCGAT TTCTGATTCCGGAGCATTGC
Downstream 100 bases:
>100_bases GGCGCCGCCCGCGCCGCCGGGCAGCGCCGCTTCGCTGCACCACCACAACAACGCCATCAAGCATATCCCCTGCCAGGAGC CCCAACATGTCCGTCCCGTC
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MTSQPAFTVDSFFDPATNTATHVVVDTATRECAIVDPVLDFDPKSGRTHHRSAERVAAQVEALGARVRWLLETHVHADHL SAAPLLQARLGGEIAIGREVTQVQKVFGTLFDAGPDFVPDGRPFDRLVDDGDTLALGRLAIRAMHTPGHTPACMTYLVAR ADGTSAPAETAAFVGDTLFMPDYGTARCDFPGGDARTLYRSIRKVLSLPPDTPLYLCHDYAPQGRPVCLVTTVGAQRRDN IHVHEGIDEDTFVAMRTARDATLEMPVLILPSVQVNMRAGRLPEPAANGVRYLKLPIDAL
Sequences:
>Translated_300_residues MTSQPAFTVDSFFDPATNTATHVVVDTATRECAIVDPVLDFDPKSGRTHHRSAERVAAQVEALGARVRWLLETHVHADHL SAAPLLQARLGGEIAIGREVTQVQKVFGTLFDAGPDFVPDGRPFDRLVDDGDTLALGRLAIRAMHTPGHTPACMTYLVAR ADGTSAPAETAAFVGDTLFMPDYGTARCDFPGGDARTLYRSIRKVLSLPPDTPLYLCHDYAPQGRPVCLVTTVGAQRRDN IHVHEGIDEDTFVAMRTARDATLEMPVLILPSVQVNMRAGRLPEPAANGVRYLKLPIDAL >Mature_299_residues TSQPAFTVDSFFDPATNTATHVVVDTATRECAIVDPVLDFDPKSGRTHHRSAERVAAQVEALGARVRWLLETHVHADHLS AAPLLQARLGGEIAIGREVTQVQKVFGTLFDAGPDFVPDGRPFDRLVDDGDTLALGRLAIRAMHTPGHTPACMTYLVARA DGTSAPAETAAFVGDTLFMPDYGTARCDFPGGDARTLYRSIRKVLSLPPDTPLYLCHDYAPQGRPVCLVTTVGAQRRDNI HVHEGIDEDTFVAMRTARDATLEMPVLILPSVQVNMRAGRLPEPAANGVRYLKLPIDAL
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-B beta-lactamase family [H]
Homologues:
Organism=Homo sapiens, GI41327741, Length=271, Percent_Identity=30.9963099630996, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI94538320, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI94538322, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI116642887, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI21703352, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787158, Length=214, Percent_Identity=28.0373831775701, Blast_Score=65, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17538952, Length=266, Percent_Identity=26.6917293233083, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI221330176, Length=277, Percent_Identity=28.5198555956679, Blast_Score=105, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005939 - InterPro: IPR001279 [H]
Pfam domain/function: PF04273 DUF442; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 32541; Mature: 32410
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSQPAFTVDSFFDPATNTATHVVVDTATRECAIVDPVLDFDPKSGRTHHRSAERVAAQV CCCCCCEEHHHCCCCCCCCEEEEEEECCCCCEEEECCHHCCCCCCCCCHHHHHHHHHHHH EALGARVRWLLETHVHADHLSAAPLLQARLGGEIAIGREVTQVQKVFGTLFDAGPDFVPD HHHHHHHHHHHHHHCCHHHHCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCCCCCC GRPFDRLVDDGDTLALGRLAIRAMHTPGHTPACMTYLVARADGTSAPAETAAFVGDTLFM CCCHHHHHCCCCEEEHHHHHHEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCEEEC PDYGTARCDFPGGDARTLYRSIRKVLSLPPDTPLYLCHDYAPQGRPVCLVTTVGAQRRDN CCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCC IHVHEGIDEDTFVAMRTARDATLEMPVLILPSVQVNMRAGRLPEPAANGVRYLKLPIDAL EEEECCCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCEEEEEECCCCC >Mature Secondary Structure TSQPAFTVDSFFDPATNTATHVVVDTATRECAIVDPVLDFDPKSGRTHHRSAERVAAQV CCCCCEEHHHCCCCCCCCEEEEEEECCCCCEEEECCHHCCCCCCCCCHHHHHHHHHHHH EALGARVRWLLETHVHADHLSAAPLLQARLGGEIAIGREVTQVQKVFGTLFDAGPDFVPD HHHHHHHHHHHHHHCCHHHHCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCCCCCC GRPFDRLVDDGDTLALGRLAIRAMHTPGHTPACMTYLVARADGTSAPAETAAFVGDTLFM CCCHHHHHCCCCEEEHHHHHHEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCEEEC PDYGTARCDFPGGDARTLYRSIRKVLSLPPDTPLYLCHDYAPQGRPVCLVTTVGAQRRDN CCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCC IHVHEGIDEDTFVAMRTARDATLEMPVLILPSVQVNMRAGRLPEPAANGVRYLKLPIDAL EEEECCCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]