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The map label for this gene is ybcK [H]

Identifier: 238027204

GI number: 238027204

Start: 1738578

End: 1740242

Strand: Reverse

Name: ybcK [H]

Synonym: bglu_1g15900

Alternate gene names: 238027204

Gene position: 1740242-1738578 (Counterclockwise)

Preceding gene: 238027210

Following gene: 238027203

Centisome position: 44.55

GC content: 67.81

Gene sequence:

>1665_bases
ATGGCGGCAAAAGCGAGAGTTTACAGCTATTTACGGTTCAGCGATCCAAAACAAGCGGCTGGCGGCAGCGTCGATCGGCA
ACTCGAGTACGCCGCGCGCTGGGCGGCGGAGCGCGAACTGCTGCTGGATGCGTCGCTTTCGCTGCGCGACGAAGGGCTGT
CCGCCTACCACCAGCGCCACGTCAAGCAGGGCGCGCTGGGCGTGTTCCTACGCGCCGTCGAAGACGGCCACGTGCCGCCC
GGCTCCGTCCTGATCGTCGAGGGGCTGGATCGCCTGAGCCGCGCCGAGCCGCTGCAGGCCCAGGCGCAGCTCGCCCAGAT
CGTCAACGCCGGCATCACGGTGGTGACGGCCAGCGACGGCCGCGAGTACAACCGCGAGCGCCTCAAGGCGCAGCCGATGG
ATCTCGTCTACAGCCTGCTGGTGATGATCCGGGCGCACGAGGAATCCGACACCAAGAGCAAGCGCGTGAAGGCGGCGATC
CGGCGCCAGTGCCAAGGATGGATCGCCGGCACCTGGCGCGCGCCGGTCCGGGTCGGCAAGGACCCGCAATGGGTGCGCGA
GGTGGACGGCAGGTTCGAGTTGATCCCGGAGCGGGCTGCCGCCATCCGCGTCGTGGTCGACATGTACAAGAAGGGGCACG
GCGCCGTGCGCACGCTGCGCGATCTGCACGAGCGCGGCATGACGATCACGAACGCCGGCCTGCCCAAGGCGACCCAGATC
TACAAGCTGCTGGCGAATCGGATGCTCATCGGCGAGAAGACGGTCGAGCTCGACGGCGAGCAATTCCGGCTCGAGGGCTA
CTACCCGCCGGTGCTCAGCCCGGCCGAGTTCGCGGACCTGCGCAACGCGGCCGGCGAGCGTGGCCGCCGGAAAGGAAAAG
GCGAGATCCCGGGCGTGGTGACCGGACTCGGCATCACCTACTGCGGTTACTGCGGCGCGGCGGTCGTCGGCCAGAACATC
ATGAACCGCCGGCGCATGGAAAACGGTCTGCCCTACCCTGGCCACCGGCGGCTGCACTGCGTGACCTATAGTTCCAGCGC
CGGCTGCAAGGTCAGCGGGAGTTGCAGCGTCGCGCCGGTCGAGCACGCGCTGATGCTCTATTGCTCGGACCAGATGAACC
TCACGCGGCTGCTTGAGGGCGACAGCGGCATGACAGCGCTGAACGCCGAACTCGCTCGCGCGCGCGCCGCCGTCGCGGAC
CTGGAGCGCCAGATAGGTCGCGTCACGGACGCGCTGCTGACCGACGAGGAGCAGGCGCCGGCAGCGCTGCTGAAGAGGAT
GCGGGACATGGAGGCGGAACTGGAGCGCGAGCGTCATCGCTGCGGGGCGCTCGAGCTGCGGGTGCATGCGGCGGCGTCCG
CCGAGGCGCCGGCCGCGGCAGACGCCTGGTCAGCGCTCGTGCGCGGCGTCGAGGAACTCGACTATGACGCCCGCATGCAG
GCGCGCCAGCTCGTTGCCGACACGTTCTCGCGGATCGTGGTGTTCCAGTCGGGGTTCTATCCGGAAACCGACGATGGTCT
GATCGGGCTGATGCTGATCGCCAAGCGCGGCAGCACACGGCTTTTGCATGTGGACCGGCGCACCGGTGAATGGCGCTCTG
CTGAAGACGTCGAAATCGTCGGCGATCTGCCTTTACCGAATCCAGGCTCAATCCAGATTCAGTAG

Upstream 100 bases:

>100_bases
GATGATCTGTTCGGAATCGACAAGGGCTTTCGGGCAGCCGAGGGATACTATACCTATACGGGGGCTCGACGTTTGGTTCT
GAGACATCTTGGAGTGGGGA

Downstream 100 bases:

>100_bases
AAAAGAGAAGCCCGCGAATGAGGCCGACTCACATTGGCAGCGGGATTCGAACACGCGCGACGGCATCGCAAGAGGTTTCC
TTAGGATCAAGCAACTAATT

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MAAKARVYSYLRFSDPKQAAGGSVDRQLEYAARWAAERELLLDASLSLRDEGLSAYHQRHVKQGALGVFLRAVEDGHVPP
GSVLIVEGLDRLSRAEPLQAQAQLAQIVNAGITVVTASDGREYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAAI
RRQCQGWIAGTWRAPVRVGKDPQWVREVDGRFELIPERAAAIRVVVDMYKKGHGAVRTLRDLHERGMTITNAGLPKATQI
YKLLANRMLIGEKTVELDGEQFRLEGYYPPVLSPAEFADLRNAAGERGRRKGKGEIPGVVTGLGITYCGYCGAAVVGQNI
MNRRRMENGLPYPGHRRLHCVTYSSSAGCKVSGSCSVAPVEHALMLYCSDQMNLTRLLEGDSGMTALNAELARARAAVAD
LERQIGRVTDALLTDEEQAPAALLKRMRDMEAELERERHRCGALELRVHAAASAEAPAAADAWSALVRGVEELDYDARMQ
ARQLVADTFSRIVVFQSGFYPETDDGLIGLMLIAKRGSTRLLHVDRRTGEWRSAEDVEIVGDLPLPNPGSIQIQ

Sequences:

>Translated_554_residues
MAAKARVYSYLRFSDPKQAAGGSVDRQLEYAARWAAERELLLDASLSLRDEGLSAYHQRHVKQGALGVFLRAVEDGHVPP
GSVLIVEGLDRLSRAEPLQAQAQLAQIVNAGITVVTASDGREYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAAI
RRQCQGWIAGTWRAPVRVGKDPQWVREVDGRFELIPERAAAIRVVVDMYKKGHGAVRTLRDLHERGMTITNAGLPKATQI
YKLLANRMLIGEKTVELDGEQFRLEGYYPPVLSPAEFADLRNAAGERGRRKGKGEIPGVVTGLGITYCGYCGAAVVGQNI
MNRRRMENGLPYPGHRRLHCVTYSSSAGCKVSGSCSVAPVEHALMLYCSDQMNLTRLLEGDSGMTALNAELARARAAVAD
LERQIGRVTDALLTDEEQAPAALLKRMRDMEAELERERHRCGALELRVHAAASAEAPAAADAWSALVRGVEELDYDARMQ
ARQLVADTFSRIVVFQSGFYPETDDGLIGLMLIAKRGSTRLLHVDRRTGEWRSAEDVEIVGDLPLPNPGSIQIQ
>Mature_553_residues
AAKARVYSYLRFSDPKQAAGGSVDRQLEYAARWAAERELLLDASLSLRDEGLSAYHQRHVKQGALGVFLRAVEDGHVPPG
SVLIVEGLDRLSRAEPLQAQAQLAQIVNAGITVVTASDGREYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAAIR
RQCQGWIAGTWRAPVRVGKDPQWVREVDGRFELIPERAAAIRVVVDMYKKGHGAVRTLRDLHERGMTITNAGLPKATQIY
KLLANRMLIGEKTVELDGEQFRLEGYYPPVLSPAEFADLRNAAGERGRRKGKGEIPGVVTGLGITYCGYCGAAVVGQNIM
NRRRMENGLPYPGHRRLHCVTYSSSAGCKVSGSCSVAPVEHALMLYCSDQMNLTRLLEGDSGMTALNAELARARAAVADL
ERQIGRVTDALLTDEEQAPAALLKRMRDMEAELERERHRCGALELRVHAAASAEAPAAADAWSALVRGVEELDYDARMQA
RQLVADTFSRIVVFQSGFYPETDDGLIGLMLIAKRGSTRLLHVDRRTGEWRSAEDVEIVGDLPLPNPGSIQIQ

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=279, Percent_Identity=33.6917562724014, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 61070; Mature: 60938

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKARVYSYLRFSDPKQAAGGSVDRQLEYAARWAAERELLLDASLSLRDEGLSAYHQRH
CCCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHH
VKQGALGVFLRAVEDGHVPPGSVLIVEGLDRLSRAEPLQAQAQLAQIVNAGITVVTASDG
HHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCC
REYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAAIRRQCQGWIAGTWRAPVRVGK
CHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECEECCCCCCC
DPQWVREVDGRFELIPERAAAIRVVVDMYKKGHGAVRTLRDLHERGMTITNAGLPKATQI
CHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCHHHHH
YKLLANRMLIGEKTVELDGEQFRLEGYYPPVLSPAEFADLRNAAGERGRRKGKGEIPGVV
HHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
TGLGITYCGYCGAAVVGQNIMNRRRMENGLPYPGHRRLHCVTYSSSAGCKVSGSCSVAPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEECCCCCCCHH
EHALMLYCSDQMNLTRLLEGDSGMTALNAELARARAAVADLERQIGRVTDALLTDEEQAP
HHEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
AALLKRMRDMEAELERERHRCGALELRVHAAASAEAPAAADAWSALVRGVEELDYDARMQ
HHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
ARQLVADTFSRIVVFQSGFYPETDDGLIGLMLIAKRGSTRLLHVDRRTGEWRSAEDVEIV
HHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEE
GDLPLPNPGSIQIQ
ECCCCCCCCCEEEC
>Mature Secondary Structure 
AAKARVYSYLRFSDPKQAAGGSVDRQLEYAARWAAERELLLDASLSLRDEGLSAYHQRH
CCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHH
VKQGALGVFLRAVEDGHVPPGSVLIVEGLDRLSRAEPLQAQAQLAQIVNAGITVVTASDG
HHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCC
REYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAAIRRQCQGWIAGTWRAPVRVGK
CHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECEECCCCCCC
DPQWVREVDGRFELIPERAAAIRVVVDMYKKGHGAVRTLRDLHERGMTITNAGLPKATQI
CHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCHHHHH
YKLLANRMLIGEKTVELDGEQFRLEGYYPPVLSPAEFADLRNAAGERGRRKGKGEIPGVV
HHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
TGLGITYCGYCGAAVVGQNIMNRRRMENGLPYPGHRRLHCVTYSSSAGCKVSGSCSVAPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEECCCCCCCHH
EHALMLYCSDQMNLTRLLEGDSGMTALNAELARARAAVADLERQIGRVTDALLTDEEQAP
HHEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
AALLKRMRDMEAELERERHRCGALELRVHAAASAEAPAAADAWSALVRGVEELDYDARMQ
HHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
ARQLVADTFSRIVVFQSGFYPETDDGLIGLMLIAKRGSTRLLHVDRRTGEWRSAEDVEIV
HHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEE
GDLPLPNPGSIQIQ
ECCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]