| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is map [H]
Identifier: 238026901
GI number: 238026901
Start: 1394305
End: 1395114
Strand: Reverse
Name: map [H]
Synonym: bglu_1g12710
Alternate gene names: 238026901
Gene position: 1395114-1394305 (Counterclockwise)
Preceding gene: 238026910
Following gene: 238026900
Centisome position: 35.71
GC content: 65.31
Gene sequence:
>810_bases ATGTCCATCACGATCAAGAACGATCACGATATCGAGCAGATGCGCGTCGCATGCCGGCTCGCGAGCGAAGTGCTCGACTA CATCACGCCGTTCGTCGTCGCGGGCACCACGACGGGCGAGCTGGACCGGCTCTGCCACGAGTACATGACCAATGTGCAAG GCACCGTGCCCGCGCCGCTCAACTACCAGCCGCCCGGCTATCCGCCCTACCCGAAGGCGATCTGCACCTCGGTCAACGAC GTGATCTGCCACGGCATTCCCGGCGACAAGGTGCTGAAGAACGGCGACGCGCTCAACATCGACATCACCGTGATCAAGAA CGGCTATTTCGGCGACACGAGCCGGATGTTCCTGATCGGCGAGGGCTCGATCCTGGCCAAGCGGCTGATCCAGACCACCT ATGAATGCATGTGGCTCGGCATCGAGCAGGTCAGGCCCGGCGCGCACCTCGGCGACATCGGCCATGCGATCCAGAAGCAT GCGGAAAGCCGCGGCTACAGCGTGGTGCGCGAGTATTGCGGGCACGGCATCGGCACGGTGTTCCACGAGGATCCGCAGGT GGTCCATTACGGCCGGCCCGGCACCGGCATCGAGATCGTGCCGGGCATGATCTTCACGATCGAGCCGATGATCAACGCCG GCAAGCGCGACATCCGTACCATGCCGGACCAGTGGACCGTCAAGACGCGCGATCGCAGCCTCTCGGCGCAATGGGAGCAC ACCGTGCTCGTCACGCCGAGCGGCTATGAAGTGCTGACGGTGTCGGCCGGCACGCCGGCGCGGCCGGCGCTCGACGCGGC GGCGGCCTGA
Upstream 100 bases:
>100_bases GTTCCGCCCGAAACCCATGCCGGACAAGCCACGCGACGGCTGCGACCACCCCGATTCGATGCGATAATCCCGGGATTCCA GGCATTCCAGGTCACCAATC
Downstream 100 bases:
>100_bases GGCGGGCGGCCCGCCGCCGGCGCGCCGTCCGGCCGGATGGCGGTCGCGCCGGGCCGGCAGCGCGGCACGCGCCGCGCAGG CCACGCGCCCGGTCCGCCCG
Product: methionine aminopeptidase
Products: NA
Alternate protein names: MAP; Peptidase M [H]
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MSITIKNDHDIEQMRVACRLASEVLDYITPFVVAGTTTGELDRLCHEYMTNVQGTVPAPLNYQPPGYPPYPKAICTSVND VICHGIPGDKVLKNGDALNIDITVIKNGYFGDTSRMFLIGEGSILAKRLIQTTYECMWLGIEQVRPGAHLGDIGHAIQKH AESRGYSVVREYCGHGIGTVFHEDPQVVHYGRPGTGIEIVPGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEH TVLVTPSGYEVLTVSAGTPARPALDAAAA
Sequences:
>Translated_269_residues MSITIKNDHDIEQMRVACRLASEVLDYITPFVVAGTTTGELDRLCHEYMTNVQGTVPAPLNYQPPGYPPYPKAICTSVND VICHGIPGDKVLKNGDALNIDITVIKNGYFGDTSRMFLIGEGSILAKRLIQTTYECMWLGIEQVRPGAHLGDIGHAIQKH AESRGYSVVREYCGHGIGTVFHEDPQVVHYGRPGTGIEIVPGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEH TVLVTPSGYEVLTVSAGTPARPALDAAAA >Mature_268_residues SITIKNDHDIEQMRVACRLASEVLDYITPFVVAGTTTGELDRLCHEYMTNVQGTVPAPLNYQPPGYPPYPKAICTSVNDV ICHGIPGDKVLKNGDALNIDITVIKNGYFGDTSRMFLIGEGSILAKRLIQTTYECMWLGIEQVRPGAHLGDIGHAIQKHA ESRGYSVVREYCGHGIGTVFHEDPQVVHYGRPGTGIEIVPGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEHT VLVTPSGYEVLTVSAGTPARPALDAAAA
Specific function: Removes the amino-terminal methionine from nascent proteins [H]
COG id: COG0024
COG function: function code J; Methionine aminopeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24A family [H]
Homologues:
Organism=Homo sapiens, GI164420681, Length=260, Percent_Identity=46.9230769230769, Blast_Score=233, Evalue=9e-62, Organism=Homo sapiens, GI40385867, Length=252, Percent_Identity=39.6825396825397, Blast_Score=189, Evalue=2e-48, Organism=Escherichia coli, GI1786364, Length=255, Percent_Identity=57.6470588235294, Blast_Score=311, Evalue=2e-86, Organism=Escherichia coli, GI1788728, Length=254, Percent_Identity=27.1653543307087, Blast_Score=82, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71996291, Length=257, Percent_Identity=43.579766536965, Blast_Score=213, Evalue=7e-56, Organism=Saccharomyces cerevisiae, GI6323273, Length=254, Percent_Identity=44.8818897637795, Blast_Score=217, Evalue=2e-57, Organism=Drosophila melanogaster, GI21355531, Length=261, Percent_Identity=46.360153256705, Blast_Score=223, Evalue=1e-58, Organism=Drosophila melanogaster, GI24583427, Length=249, Percent_Identity=38.1526104417671, Blast_Score=186, Evalue=1e-47,
Paralogues:
None
Copy number: 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR002467 [H]
Pfam domain/function: PF00557 Peptidase_M24 [H]
EC number: =3.4.11.18 [H]
Molecular weight: Translated: 29446; Mature: 29315
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00680 MAP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITIKNDHDIEQMRVACRLASEVLDYITPFVVAGTTTGELDRLCHEYMTNVQGTVPAPL CEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCC NYQPPGYPPYPKAICTSVNDVICHGIPGDKVLKNGDALNIDITVIKNGYFGDTSRMFLIG CCCCCCCCCCCHHHHHCHHHHEECCCCCHHHCCCCCEEEEEEEEEECCCCCCCCEEEEEE EGSILAKRLIQTTYECMWLGIEQVRPGAHLGDIGHAIQKHAESRGYSVVREYCGHGIGTV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCE FHEDPQVVHYGRPGTGIEIVPGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEH ECCCCCEEEECCCCCCCEECCCEEEEEEHHHCCCCHHHHCCCCCEEEEECCCCCCCCCCE TVLVTPSGYEVLTVSAGTPARPALDAAAA EEEECCCCCEEEEEECCCCCCCCHHHCCC >Mature Secondary Structure SITIKNDHDIEQMRVACRLASEVLDYITPFVVAGTTTGELDRLCHEYMTNVQGTVPAPL EEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCC NYQPPGYPPYPKAICTSVNDVICHGIPGDKVLKNGDALNIDITVIKNGYFGDTSRMFLIG CCCCCCCCCCCHHHHHCHHHHEECCCCCHHHCCCCCEEEEEEEEEECCCCCCCCEEEEEE EGSILAKRLIQTTYECMWLGIEQVRPGAHLGDIGHAIQKHAESRGYSVVREYCGHGIGTV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCE FHEDPQVVHYGRPGTGIEIVPGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEH ECCCCCEEEECCCCCCCEECCCEEEEEEHHHCCCCHHHHCCCCCEEEEECCCCCCCCCCE TVLVTPSGYEVLTVSAGTPARPALDAAAA EEEECCCCCEEEEEECCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]