Click here to switch to the map view.

The map label for this gene is soxR [C]

Identifier: 238026850

GI number: 238026850

Start: 1322478

End: 1322909

Strand: Direct

Name: soxR [C]

Synonym: bglu_1g12150

Alternate gene names: 238026850

Gene position: 1322478-1322909 (Clockwise)

Preceding gene: 238026848

Following gene: 238026851

Centisome position: 33.85

GC content: 62.27

Gene sequence:

>432_bases
ATGGGTCAGCTAGATATTGGCGAAGTGGCGCAGCGATCCGGTGTTCCGGCATCGACACTGAGGTTCTACGAGGAAAAGGG
GCTCATCAGGTCGTGCGGGCGCCGTGGATTGCGTCGTCTGTTTGATCCTGGCGTGCTGGACCAGCTAGCGTTGATCGCTT
TGGGGCGCGCCGGTGGATTCTCGTTGGATGATATTGCGTCGATGTTGGGGGCCGATGGGCAACCGCGCATCGACCGCCAG
ATGCTCGTGGCAAAGGCCGGGGAGTTGGACAGGAAGATTCGCAAACTGTGCGCGATGCGCGATGGGCTGCGGCATGCCGC
CGTGTGCCCTGCGCCGAGCCACATGGAGTGCCCTACATTCCGGCGCATCCTTCGCTCGGTGGCCTCTGGAACGGTTGGCG
CACGGGTGAAGAGAGTGCCGAAGGAACAGTAG

Upstream 100 bases:

>100_bases
CTTTCAGTCAGATGTCTGGAATCCACGATCACTATCCTCGACTTACCCCTAGGGGGCGGAAGCTAAACTATGCAACTTCA
AGTCGACTTGAGGTCAAGCG

Downstream 100 bases:

>100_bases
AAGTTGTCATGAGAGCGTCAATCGTCAACGATTCCGGTGGCCGCGCCGAATGTTGCTAGTTGGCCGTATCTCGACCCATG
TGAATCGCGCGAGGTTTAGA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Transcriptional Regulator MerR Family Protein; Redox-Sensitive Transcriptional Activator; Cu(I)-Responsive Transcriptional Regulator; Regulatory Protein; Regulatory Protein MerR; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; Zn(II)-Responsive Transcriptional Regulator; Redox-Sensitive Transcriptional Activator SoxR; SoxR Family Transcriptional Regulator; Transcriptional Regulator Merr Family; MerR Family Regulatory Family

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MGQLDIGEVAQRSGVPASTLRFYEEKGLIRSCGRRGLRRLFDPGVLDQLALIALGRAGGFSLDDIASMLGADGQPRIDRQ
MLVAKAGELDRKIRKLCAMRDGLRHAAVCPAPSHMECPTFRRILRSVASGTVGARVKRVPKEQ

Sequences:

>Translated_143_residues
MGQLDIGEVAQRSGVPASTLRFYEEKGLIRSCGRRGLRRLFDPGVLDQLALIALGRAGGFSLDDIASMLGADGQPRIDRQ
MLVAKAGELDRKIRKLCAMRDGLRHAAVCPAPSHMECPTFRRILRSVASGTVGARVKRVPKEQ
>Mature_142_residues
GQLDIGEVAQRSGVPASTLRFYEEKGLIRSCGRRGLRRLFDPGVLDQLALIALGRAGGFSLDDIASMLGADGQPRIDRQM
LVAKAGELDRKIRKLCAMRDGLRHAAVCPAPSHMECPTFRRILRSVASGTVGARVKRVPKEQ

Specific function: Activates The Transcription Of The Soxs Gene Which Itself Controls The Superoxide Response Regulon. Soxr Contains A 2fe-2s Iron-Sulfur Cluster That May Act As A Redox Sensor System That Recognizes Superoxide. The Variable Redox State Of The Fe-S Cluster I

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790498, Length=120, Percent_Identity=37.5, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15582; Mature: 15451

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQLDIGEVAQRSGVPASTLRFYEEKGLIRSCGRRGLRRLFDPGVLDQLALIALGRAGGF
CCCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
SLDDIASMLGADGQPRIDRQMLVAKAGELDRKIRKLCAMRDGLRHAAVCPAPSHMECPTF
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
RRILRSVASGTVGARVKRVPKEQ
HHHHHHHHCCHHHHHHHCCCCCC
>Mature Secondary Structure 
GQLDIGEVAQRSGVPASTLRFYEEKGLIRSCGRRGLRRLFDPGVLDQLALIALGRAGGF
CCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
SLDDIASMLGADGQPRIDRQMLVAKAGELDRKIRKLCAMRDGLRHAAVCPAPSHMECPTF
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
RRILRSVASGTVGARVKRVPKEQ
HHHHHHHHCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA