| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026799
Identifier: 238026799
GI number: 238026799
Start: 1271679
End: 1272377
Strand: Reverse
Name: 238026799
Synonym: bglu_1g11570
Alternate gene names: NA
Gene position: 1272377-1271679 (Counterclockwise)
Preceding gene: 238026800
Following gene: 238026798
Centisome position: 32.57
GC content: 75.11
Gene sequence:
>699_bases ATGCCCTGTCGAATCGCACTCCTGATGTTTCCCGGCGTCCAGGCCCTCGACCTCGTCGGCCCGCACGACGTATTCGCGGC ACTGCCCGACACCACGCTCCACCGCGTCGCGAAAAGCACCGCGCCGCTCGCCGCCGCCCACGGCCTGGTGATGACGCCCG ACACCGATTTCGACGCCTGCCCCGACGTCGACGTGCTGTGCGTGCCAGGCGGCTCCGGCGTCGACGAACTGCTGCTCGAC GACGCGACGCTCGCGTTCGTGCGGCGAGCGGCCGCCTCGGCGCGCTACCTCGGTTCGGTCTGCACCGGCGCGCTGGTACT CGGCGCCGCAGGCCTGCTGCGTGGCCGCCGCGCGACCACCCATTGGGCCTCGCTGCCGCTGCTCGCGGCGTTCGGCGCCA TGCCGGTGCAGGAGCGCGTGGTGCGCGACGGACGGCTCGTCACGGGCGGCGGGGTCACGGCCGGCATCGACTTCGCGCTG ACCATCGCCCGCGAGCTGCACGGCGAGGCCGTCGCGCAGGCCGCGCAGCTGGCGATCGAATACGCGCCCGCGCCACCGTT CGGTGCGGGCTGCCCCGCGACGGCGCCGTGCGCAGTGGTCGATGCCGAGCGGGCCCGCTACGCGCCGATCATCGCGGCAC GCGAGGCACGGGTCGCGCAGGCGGCCGCGCGGCTCGCGGCCGACCATCCGGCGCGCTGA
Upstream 100 bases:
>100_bases CGGCTGGCGCCGACGAGCGCCGTGCCGAATGAGCCGCTGAGCCGCCCCGCCCGCCCCCACCGCGAAGGCACCCGCCCCCG CCATCACCCCGAGCCCCGTC
Downstream 100 bases:
>100_bases GGGGCGGCAGCCGCCATTCCCGCTTGGCCACCGTTGCGCGGCACGCGCGGATTATCCGGAAATCGGCAATGGGGCGGCTA AAGCAATCGATCAGGCCAAC
Product: DJ-1/PfpI family protein
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MPCRIALLMFPGVQALDLVGPHDVFAALPDTTLHRVAKSTAPLAAAHGLVMTPDTDFDACPDVDVLCVPGGSGVDELLLD DATLAFVRRAAASARYLGSVCTGALVLGAAGLLRGRRATTHWASLPLLAAFGAMPVQERVVRDGRLVTGGGVTAGIDFAL TIARELHGEAVAQAAQLAIEYAPAPPFGAGCPATAPCAVVDAERARYAPIIAAREARVAQAAARLAADHPAR
Sequences:
>Translated_232_residues MPCRIALLMFPGVQALDLVGPHDVFAALPDTTLHRVAKSTAPLAAAHGLVMTPDTDFDACPDVDVLCVPGGSGVDELLLD DATLAFVRRAAASARYLGSVCTGALVLGAAGLLRGRRATTHWASLPLLAAFGAMPVQERVVRDGRLVTGGGVTAGIDFAL TIARELHGEAVAQAAQLAIEYAPAPPFGAGCPATAPCAVVDAERARYAPIIAAREARVAQAAARLAADHPAR >Mature_231_residues PCRIALLMFPGVQALDLVGPHDVFAALPDTTLHRVAKSTAPLAAAHGLVMTPDTDFDACPDVDVLCVPGGSGVDELLLDD ATLAFVRRAAASARYLGSVCTGALVLGAAGLLRGRRATTHWASLPLLAAFGAMPVQERVVRDGRLVTGGGVTAGIDFALT IARELHGEAVAQAAQLAIEYAPAPPFGAGCPATAPCAVVDAERARYAPIIAAREARVAQAAARLAADHPAR
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase C56 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002818 [H]
Pfam domain/function: PF01965 DJ-1_PfpI [H]
EC number: NA
Molecular weight: Translated: 23771; Mature: 23639
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCRIALLMFPGVQALDLVGPHDVFAALPDTTLHRVAKSTAPLAAAHGLVMTPDTDFDAC CCCEEEEEECCCCHHHHCCCCHHHHHHCCCHHHHHHHHHCCCHHHHCCEEECCCCCCCCC PDVDVLCVPGGSGVDELLLDDATLAFVRRAAASARYLGSVCTGALVLGAAGLLRGRRATT CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH HWASLPLLAAFGAMPVQERVVRDGRLVTGGGVTAGIDFALTIARELHGEAVAQAAQLAIE HHHHHHHHHHHCCCCHHHHHHHCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHE YAPAPPFGAGCPATAPCAVVDAERARYAPIIAAREARVAQAAARLAADHPAR ECCCCCCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PCRIALLMFPGVQALDLVGPHDVFAALPDTTLHRVAKSTAPLAAAHGLVMTPDTDFDAC CCEEEEEECCCCHHHHCCCCHHHHHHCCCHHHHHHHHHCCCHHHHCCEEECCCCCCCCC PDVDVLCVPGGSGVDELLLDDATLAFVRRAAASARYLGSVCTGALVLGAAGLLRGRRATT CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH HWASLPLLAAFGAMPVQERVVRDGRLVTGGGVTAGIDFALTIARELHGEAVAQAAQLAIE HHHHHHHHHHHCCCCHHHHHHHCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHE YAPAPPFGAGCPATAPCAVVDAERARYAPIIAAREARVAQAAARLAADHPAR ECCCCCCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8157602 [H]