| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is linX [H]
Identifier: 238025019
GI number: 238025019
Start: 2101666
End: 2102460
Strand: Reverse
Name: linX [H]
Synonym: bglu_2g16760
Alternate gene names: 238025019
Gene position: 2102460-2101666 (Counterclockwise)
Preceding gene: 238025020
Following gene: 238025018
Centisome position: 74.36
GC content: 71.19
Gene sequence:
>795_bases ATGACGACGATCGGAACGCCGCGGCTCGCCGGCAAATGCGCGTTCATCACCGGGGCCACGGGCGGCCTGGGCCAAGCGAT GGCACGGCGCATGGCCGAGCACGGCGCGAAGGTGTTCGTGACCGACGTGGCCGCGCGCCAGGAGGCGCTCGCCGCGCTGG CCGCCGAGCTCAACGACGCGGCCGGCGCGCGCGTGGCCTGGGCCGCCGAGCAGGACGTGCGCGACGATGCGCGCTGGCAG GCGCTCGCGGCCGAAGCCCATGCCGCGATGGGCGGGCTGTCGGTGCTCGTCAACAACGCCGGGGTGGGCTCGCTCGGCAG CGTCGAGCAGATCGAGCAGAAAGAGTGGCGGCGCGTGATGGACATCAACGTCGAGAGCATCATCCTCGGCGTGCGCCACG CGTTGCCGTTCCTGCGCGAGAGCCAGCCGGCCTCGATCATCAACGTGTCCTCGGTGGCCGCCTTCAAGCACGAGCCCGAA TACACCGCCTACAACGCGTCCAAGGCGGCGGTGGCCTCGCTGACCAAGTCGATCGCCGTCGACTGCGCGCGCAAGCAGAC CGGCGTGCGCTGCAATTCGCTGCATCCGTCGTTCATCCGCACCGGCATCGTCGAGCCGTTCTTCCAGCAGCTCGGCGAGC GCGACGCCACGCGCCGGCTGGTGCGCGGCGTGCCGATGGGGCGCCTCGGCGAGCCCGACGACGTGGCCTATGCCGCGCTC TATCTGGCCAGCGACGAGAGCCGCTACGTGACGGGCGCCGAGCTCGTGATCGACGGCGGGCTGTGTGCGATGTGA
Upstream 100 bases:
>100_bases GCGGCTATCTGTCGGTATAGTGACGACGCGCGGCGCGGGCGCGCCGCACGAGGCAATCGACAAGGCAAGCGACAACCCAA TCGAAACGGGAGGAGCAGGG
Downstream 100 bases:
>100_bases GGCGCGCGCGCCGCGCATCGCGCGTGGCGCACCGAACCATCCAATCCGTATTCCAGTGAATTTCCAGGAGCCATCATGTC CGACATCATGAACCGCCAGT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MTTIGTPRLAGKCAFITGATGGLGQAMARRMAEHGAKVFVTDVAARQEALAALAAELNDAAGARVAWAAEQDVRDDARWQ ALAAEAHAAMGGLSVLVNNAGVGSLGSVEQIEQKEWRRVMDINVESIILGVRHALPFLRESQPASIINVSSVAAFKHEPE YTAYNASKAAVASLTKSIAVDCARKQTGVRCNSLHPSFIRTGIVEPFFQQLGERDATRRLVRGVPMGRLGEPDDVAYAAL YLASDESRYVTGAELVIDGGLCAM
Sequences:
>Translated_264_residues MTTIGTPRLAGKCAFITGATGGLGQAMARRMAEHGAKVFVTDVAARQEALAALAAELNDAAGARVAWAAEQDVRDDARWQ ALAAEAHAAMGGLSVLVNNAGVGSLGSVEQIEQKEWRRVMDINVESIILGVRHALPFLRESQPASIINVSSVAAFKHEPE YTAYNASKAAVASLTKSIAVDCARKQTGVRCNSLHPSFIRTGIVEPFFQQLGERDATRRLVRGVPMGRLGEPDDVAYAAL YLASDESRYVTGAELVIDGGLCAM >Mature_263_residues TTIGTPRLAGKCAFITGATGGLGQAMARRMAEHGAKVFVTDVAARQEALAALAAELNDAAGARVAWAAEQDVRDDARWQA LAAEAHAAMGGLSVLVNNAGVGSLGSVEQIEQKEWRRVMDINVESIILGVRHALPFLRESQPASIINVSSVAAFKHEPEY TAYNASKAAVASLTKSIAVDCARKQTGVRCNSLHPSFIRTGIVEPFFQQLGERDATRRLVRGVPMGRLGEPDDVAYAALY LASDESRYVTGAELVIDGGLCAM
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ). LinX appears not to be involved in gamma-HCH degradation pathway [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=32.9411764705882, Blast_Score=132, Evalue=4e-31, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=35.2941176470588, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=32.8185328185328, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI5031737, Length=265, Percent_Identity=30.5660377358491, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=28.2945736434109, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=29.3172690763052, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI59889578, Length=234, Percent_Identity=31.6239316239316, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI126723191, Length=195, Percent_Identity=32.3076923076923, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI33667109, Length=207, Percent_Identity=32.8502415458937, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=26.5625, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=30.8080808080808, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI7705925, Length=256, Percent_Identity=25.78125, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=29.9212598425197, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI40254986, Length=149, Percent_Identity=34.2281879194631, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=26.1044176706827, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4758504, Length=265, Percent_Identity=29.0566037735849, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4503301, Length=254, Percent_Identity=25.5905511811024, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI142976729, Length=222, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI302344755, Length=115, Percent_Identity=33.0434782608696, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI224922801, Length=177, Percent_Identity=30.5084745762712, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI32455239, Length=188, Percent_Identity=32.9787234042553, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI5031765, Length=188, Percent_Identity=32.9787234042553, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40807363, Length=203, Percent_Identity=26.6009852216749, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI20149619, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=37.3540856031128, Blast_Score=144, Evalue=9e-36, Organism=Escherichia coli, GI1790717, Length=263, Percent_Identity=27.3764258555133, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=31.9066147859922, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=30.2681992337165, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1789208, Length=256, Percent_Identity=28.125, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=29.0836653386454, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=29.8804780876494, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=32.156862745098, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788459, Length=173, Percent_Identity=28.3236994219653, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=29.5698924731183, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=23.4615384615385, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI2367365, Length=256, Percent_Identity=28.515625, Blast_Score=65, Evalue=5e-12, Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=33.976833976834, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=35.7976653696498, Blast_Score=123, Evalue=7e-29, Organism=Caenorhabditis elegans, GI17559104, Length=275, Percent_Identity=33.0909090909091, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=30, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560676, Length=266, Percent_Identity=30.0751879699248, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=31.9852941176471, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17538480, Length=273, Percent_Identity=30.7692307692308, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=33.7037037037037, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17562906, Length=273, Percent_Identity=31.1355311355311, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.4606741573034, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI72000259, Length=272, Percent_Identity=31.6176470588235, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17562904, Length=276, Percent_Identity=29.7101449275362, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI115534694, Length=255, Percent_Identity=28.2352941176471, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17562908, Length=273, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI71994604, Length=260, Percent_Identity=31.1538461538462, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17563726, Length=281, Percent_Identity=29.1814946619217, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=30, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=29.7794117647059, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560332, Length=276, Percent_Identity=30.0724637681159, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562990, Length=274, Percent_Identity=28.4671532846715, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538486, Length=277, Percent_Identity=28.158844765343, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17560150, Length=274, Percent_Identity=28.4671532846715, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=31.1284046692607, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538182, Length=264, Percent_Identity=30.6818181818182, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17567345, Length=225, Percent_Identity=28, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17565030, Length=276, Percent_Identity=27.536231884058, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17544670, Length=282, Percent_Identity=27.6595744680851, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=29.8850574712644, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71982365, Length=151, Percent_Identity=31.7880794701987, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17558628, Length=147, Percent_Identity=31.9727891156463, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=25.1937984496124, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=25.8883248730964, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17564282, Length=200, Percent_Identity=26, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=23.2323232323232, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=218, Percent_Identity=30.7339449541284, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=25.0980392156863, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=219, Percent_Identity=27.3972602739726, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=29.5, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355319, Length=267, Percent_Identity=34.8314606741573, Blast_Score=137, Evalue=1e-32, Organism=Drosophila melanogaster, GI21357041, Length=265, Percent_Identity=34.3396226415094, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI24644339, Length=263, Percent_Identity=33.4600760456274, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI23397609, Length=263, Percent_Identity=32.6996197718631, Blast_Score=116, Evalue=1e-26, Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=33.5907335907336, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=32.4110671936759, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI24639444, Length=258, Percent_Identity=30.2325581395349, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24644337, Length=176, Percent_Identity=38.0681818181818, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357673, Length=262, Percent_Identity=27.8625954198473, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI17737361, Length=265, Percent_Identity=29.811320754717, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24584748, Length=196, Percent_Identity=27.0408163265306, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=27.0408163265306, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI18859837, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281364892, Length=200, Percent_Identity=27, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21355631, Length=186, Percent_Identity=25.8064516129032, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574402, Length=197, Percent_Identity=24.8730964467005, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24584744, Length=195, Percent_Identity=25.1282051282051, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24584752, Length=195, Percent_Identity=28.7179487179487, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007236, Length=252, Percent_Identity=25.3968253968254, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24641388, Length=228, Percent_Identity=29.3859649122807, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28009; Mature: 27878
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTIGTPRLAGKCAFITGATGGLGQAMARRMAEHGAKVFVTDVAARQEALAALAAELNDA CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHC AGARVAWAAEQDVRDDARWQALAAEAHAAMGGLSVLVNNAGVGSLGSVEQIEQKEWRRVM CCCEEEECCCHHCHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCHHHHHHHHHHHHH DINVESIILGVRHALPFLRESQPASIINVSSVAAFKHEPEYTAYNASKAAVASLTKSIAV HCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH DCARKQTGVRCNSLHPSFIRTGIVEPFFQQLGERDATRRLVRGVPMGRLGEPDDVAYAAL HHHHHHCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHEEEE YLASDESRYVTGAELVIDGGLCAM EEECCCCCEEECCEEEECCCCCCC >Mature Secondary Structure TTIGTPRLAGKCAFITGATGGLGQAMARRMAEHGAKVFVTDVAARQEALAALAAELNDA CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHC AGARVAWAAEQDVRDDARWQALAAEAHAAMGGLSVLVNNAGVGSLGSVEQIEQKEWRRVM CCCEEEECCCHHCHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCHHHHHHHHHHHHH DINVESIILGVRHALPFLRESQPASIINVSSVAAFKHEPEYTAYNASKAAVASLTKSIAV HCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH DCARKQTGVRCNSLHPSFIRTGIVEPFFQQLGERDATRRLVRGVPMGRLGEPDDVAYAAL HHHHHHCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHEEEE YLASDESRYVTGAELVIDGGLCAM EEECCCCCEEECCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]